TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000006_1.0 # Protein # Glutathione peroxidase 3 (GPx3) # Homo sapiens # Complete (226 letters) Database: P.ultimum/genome.fa 82 sequences; 42,801,618 total letters Searching.................................................................................done Score E Sequences producing significant alignments: (bits) Value gb|GL376611.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 122 2e-28 gb|GL376564.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 107 7e-24 gb|GL376617.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 59 3e-09 gb|GL376620.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 30 2.4 gb|GL376625.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 28 7.0 >gb|GL376611.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582014, whole genome shotgun sequence Length = 494327 Score = 122 bits (307), Expect = 2e-28 Identities = 76/219 (34%), Positives = 106/219 (48%), Gaps = 39/219 (17%) Frame = +2 Query: 39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLTGQ-YIELNALQEELAPFGLVIL 97 T++++ ++ G EYI YAGK +L VNVAS+ T + Y ++N L E+ LVI+ Sbjct: 346700 TVHQFSFRSLTGGEYIRLADYAGKVILLVNVASHCNSTTKAYTQMNELAEKYPD--LVII 346873 Query: 98 GFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCP 157 G PCNQFG QE EI +LK++RPG GF P F+L EK +VNG + FLK S P Sbjct: 346874 GCPCNQFGHQENLNGEEIYTSLKHIRPGKGFEPKFKLTEKMEVNGANAHAVFNFLKLSLP 347053 Query: 158 ------------PTSELLGTSDRLFWEPMKVHDIRWNFEK-------------------- 185 S + RL W P+ D+ WNFEK Sbjct: 347054 YPADRTLMDEMSSPSGVFSHPMRLIWMPVSRADLSWNFEKVCILVFFIGHHVFGVRRR*F 347233 Query: 186 ------FLVGPDGIPIMRWHHRTTVSNVKMDILSYMRRQ 218 FL+GPDG+P R+ + ++ DI M+ + Sbjct: 347234 LLCMLQFLIGPDGVPFKRFSPKLDFKSISDDIELLMKME 347350 >gb|GL376564.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581313, whole genome shotgun sequence Length = 1115623 Score = 107 bits (268), Expect = 7e-24 Identities = 71/169 (42%), Positives = 88/169 (52%), Gaps = 3/169 (1%) Frame = -2 Query: 33 HGGISG--TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLTG-QYIELNALQEEL 89 HG I +IYE I G E I F +Y GK +L VNV+S GLT Y EL AL E+ Sbjct: 433974 HGEIENVKSIYELKDTDISGTE-ITFDKYKGKVLLVVNVSSNCGLTPTNYPELTALDEKY 433798 Query: 90 APFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFY 149 GLVIL FPCNQFG QEPG N EI+ +K + +Q FEK DVNG + + Sbjct: 433797 RDQGLVILAFPCNQFGSQEPGTNEEIVEFVKQ------YNAQYQFFEKADVNGPHARPVF 433636 Query: 150 TFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRW 198 +LK P T + I+WNF KFLV +G+P R+ Sbjct: 433635 AYLKAKLPGTFG---------------NYIKWNFTKFLVDRNGVPYKRF 433534 Score = 106 bits (264), Expect = 2e-23 Identities = 74/190 (38%), Positives = 94/190 (49%), Gaps = 3/190 (1%) Frame = -1 Query: 33 HGGISG--TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLTG-QYIELNALQEEL 89 HG I +IYE I G E I F +Y GK +L VNV+S GLT Y EL AL E+ Sbjct: 420058 HGEIENVKSIYELKDTDISGTE-ITFDKYKGKVLLVVNVSSNCGLTPTNYPELTALDEKY 419882 Query: 90 APFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFY 149 GLVIL FPCNQFG QEPG N EI+ +K + +Q FEK DVNG + + Sbjct: 419881 RDQGLVILAFPCNQFGSQEPGTNEEIVEFVKQ------YNAQYQFFEKADVNGPHARPVF 419720 Query: 150 TFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKM 209 +LK P T + I+WNF KFLV +G P R+ + + Sbjct: 419719 AYLKAKLPGTFG---------------NYIKWNFTKFLVDRNGQPFKRFAPTDKPLSFEH 419585 Query: 210 DILSYMRRQA 219 DI + +A Sbjct: 419584 DIQELLSAEA 419555 Score = 98.6 bits (244), Expect = 4e-21 Identities = 64/174 (36%), Positives = 90/174 (51%), Gaps = 1/174 (0%) Frame = -1 Query: 39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLTGQ-YIELNALQEELAPFGLVIL 97 +IY++ L I G + F +Y GK +L VNVAS L Y +L L E+ G +L Sbjct: 429976 SIYQFMDLDIHGNP-VSFDKYRGKVLLIVNVASGCKLASHNYPQLTHLHEKYRNQGFEVL 429800 Query: 98 GFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCP 157 FPCNQFG +EP N EI ++YV F N++LFEK DVNG + +TFLK P Sbjct: 429799 AFPCNQFGSEEPRNNEEI---VQYV---SQFNANYELFEKADVNGSHARPVFTFLKAKLP 429638 Query: 158 PTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDI 211 T ++WNF KFLV +G+P R+ + + +++ DI Sbjct: 429637 GTFGSF---------------VKWNFTKFLVDRNGVPYKRFSPKDSPFDLEDDI 429521 Score = 94.0 bits (232), Expect = 1e-19 Identities = 61/174 (35%), Positives = 87/174 (50%), Gaps = 1/174 (0%) Frame = -2 Query: 39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLTGQ-YIELNALQEELAPFGLVIL 97 +IY++ + I G + F +Y GK +LFVNVAS L Q Y EL+ L + G +L Sbjct: 423714 SIYQFMDVNIYGNP-VSFDKYRGKVLLFVNVASNSKLAPQNYPELSMLYQRYCDQGFEVL 423538 Query: 98 GFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCP 157 FPCNQF +EPG +IL +K F N+Q FEK DVNG + +T+LK P Sbjct: 423537 AFPCNQFRSEEPGTTEQILEYVKQ------FNANYQFFEKADVNGAHARPVFTYLKAKLP 423376 Query: 158 PTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDI 211 + ++WNF KFLV +G+P R+ + ++ DI Sbjct: 423375 GKFG---------------NYVKWNFTKFLVDRNGMPYKRYAPTDSPLALEQDI 423259 Score = 91.7 bits (226), Expect = 5e-19 Identities = 63/182 (34%), Positives = 90/182 (49%), Gaps = 1/182 (0%) Frame = -3 Query: 39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLT-GQYIELNALQEELAPFGLVIL 97 +IY+ + G+E +P +Y GK +L VNV+S GLT Y L L + GLV+L Sbjct: 437735 SIYDLKDYDMSGQE-VPIDKYKGKVLLVVNVSSNCGLTPSNYPALVELDNKYRDQGLVVL 437559 Query: 98 GFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCP 157 FPCNQF QEPG + EI+ +K + F FEK DVNG K + +T+LK P Sbjct: 437558 AFPCNQFALQEPGTHEEIMEFVK------KYNCKFPFFEKNDVNGAKARPVFTYLKAKLP 437397 Query: 158 PTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMRR 217 T F ++WNF KFL+ G P R+ ++ + DI + + Sbjct: 437396 -------TKFGSF--------VKWNFTKFLIDRKGQPYKRFSPYDLPTSFEDDIQLLLAQ 437262 Query: 218 QA 219 +A Sbjct: 437261 KA 437256 Score = 89.7 bits (221), Expect = 2e-18 Identities = 61/181 (33%), Positives = 90/181 (49%), Gaps = 1/181 (0%) Frame = +3 Query: 39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLTG-QYIELNALQEELAPFGLVIL 97 +IYE + G E + ++Y GK +L VNV+S GLT Y EL L ++ GL IL Sbjct: 442560 SIYELKDYDMQGNE-VSMEKYKGKVLLVVNVSSLCGLTPTNYPELAELDKKYRDQGLEIL 442736 Query: 98 GFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCP 157 FPCNQF QEPG + EI+ +K + F FEK DVNG + +T+LK P Sbjct: 442737 AFPCNQFSNQEPGTHEEIMEFVK------KYNCEFPFFEKHDVNGASARPVFTYLKAKLP 442898 Query: 158 PTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMRR 217 + + ++WNF KFLV +G P R+ + + + DI + + + Sbjct: 442899 GSFG---------------NFVKWNFTKFLVDRNGQPYKRFAPKDLPFSFEDDIKALLEQ 443033 Query: 218 Q 218 + Sbjct: 443034 K 443036 Score = 89.7 bits (221), Expect = 2e-18 Identities = 61/181 (33%), Positives = 90/181 (49%), Gaps = 1/181 (0%) Frame = -3 Query: 39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLTG-QYIELNALQEELAPFGLVIL 97 +IYE + G E + ++Y GK +L VNV+S GLT Y EL L ++ GL IL Sbjct: 435902 SIYELKDYDMQGNE-VSMEKYKGKVLLVVNVSSLCGLTPTNYPELAELDKKYRDQGLEIL 435726 Query: 98 GFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCP 157 FPCNQF QEPG + EI+ +K + F FEK DVNG + +T+LK P Sbjct: 435725 AFPCNQFASQEPGTHEEIMEFVK------KYNCEFPFFEKHDVNGASARPVFTYLKAKLP 435564 Query: 158 PTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMRR 217 + + ++WNF KFLV +G P R+ + + + DI + + + Sbjct: 435563 GSFG---------------NFVKWNFTKFLVDRNGQPYKRFAPKDLPFSFEDDIKALLEQ 435429 Query: 218 Q 218 + Sbjct: 435428 K 435426 Score = 89.0 bits (219), Expect = 3e-18 Identities = 61/181 (33%), Positives = 85/181 (46%), Gaps = 1/181 (0%) Frame = -1 Query: 39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLT-GQYIELNALQEELAPFGLVIL 97 +IY++ I G + F +Y GK +L VNVAS + + L L E+ G IL Sbjct: 427222 SIYQFMDRDIHGNP-VSFDKYRGKVLLVVNVASGCKMAYHNFPALTVLHEKYRNQGFEIL 427046 Query: 98 GFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCP 157 FPCNQFG +EP + EIL L F N++LFEK DVNG + + FLK P Sbjct: 427045 AFPCNQFGGEEPRNHEEILQYLSQ------FNANYELFEKADVNGSHARPVFMFLKAKLP 426884 Query: 158 PTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMRR 217 T ++WNF KFLV +G P R+ + ++ DI ++ Sbjct: 426883 GTFGSF---------------VKWNFTKFLVDRNGKPFKRFSPTDSPFELEQDIQELLKT 426749 Query: 218 Q 218 Q Sbjct: 426748 Q 426746 Score = 54.7 bits (130), Expect = 7e-08 Identities = 58/229 (25%), Positives = 90/229 (39%), Gaps = 3/229 (1%) Frame = -1 Query: 1 MARLLQASCLLSLLLAGFVSQSRGQEKSKMDCHGGISGTIYEYGALTIDGEEYIPFKQYA 60 +++ Q LL+LL AG + ++ K + Y G+ ++ + Sbjct: 402427 VSKTRQEEWLLALLDAGAKYKEANRDHDKW---ASPDASFYSLTDADASGKRFL-MEDLV 402260 Query: 61 GKYVLFVNVASYUGLTG-QYIELNALQEELAPFGLVILGFPCNQFGK--QEPGENSEILP 117 G VL VNVAS QY EL + ++ G +L FP +QFG QE + EIL Sbjct: 402259 GSVVLVVNVASKDPQAPLQYPELVTIADKYHDDGFTVLAFPSDQFGGDGQEFDTDGEILS 402080 Query: 118 TLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVH 177 L + NF + K DVNG + + +L P + + P Sbjct: 402079 YLVQA-----YKVNFPIMTKRDVNGLDARDAFLYLNAHLPGS-----------FGPFT-- 401954 Query: 178 DIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMRRQAALGVKRK 226 WNF KFL+ G P R+ +++ DI + V R+ Sbjct: 401953 --EWNFTKFLIDRHGKPFKRYETSVLPQSLEADIRQLLESPVPESVARQ 401813 >gb|GL376617.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582020, whole genome shotgun sequence Length = 790859 Score = 59.3 bits (142), Expect = 3e-09 Identities = 49/156 (31%), Positives = 68/156 (43%), Gaps = 17/156 (10%) Frame = +1 Query: 84 ALQEELAPFGLVILGFPCNQFGKQEPGENSEIL-----------PTLKYVRPG--GGFVP 130 AL E+ GL IL FPCNQFG QE G ++I+ P V P + Sbjct: 515053 ALYEKYHEQGLEILAFPCNQFGSQESGTQAQIMQFVEEHYHVTFPVFAKVIPPRCAQYAG 515232 Query: 131 NFQLFEK----GDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKF 186 L + DVNG +TFLK S+L G +I+WNF KF Sbjct: 515233 ELNLLTEVSP*VDVNGANAHPLFTFLK------SKLSG---------FITSNIKWNFSKF 515367 Query: 187 LVGPDGIPIMRWHHRTTVSNVKMDILSYMRRQAALG 222 L+ DG+P R+ T+ ++ DI+ + +Q G Sbjct: 515368 LI-VDGVPFKRYATTTSPLAMEQDIVQALHQQEPSG 515472 >gb|GL376620.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582023, whole genome shotgun sequence Length = 1683196 Score = 29.6 bits (65), Expect = 2.4 Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 1/113 (0%) Frame = +1 Query: 89 LAPFGLVILGFPCNQFGKQEPGENSEILPTLK-YVRPGGGFVPNFQLFEKGDVNGEKEQK 147 L P + G C Q ++ I+ + + + P GF F L + G+ N E + Sbjct: 1423528 LNPMDPAVCGVRCANEETQISFTSTSIVRSAQEFAIPANGFTVEFFLKKDGE-NAPLEPQ 1423704 Query: 148 FYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHH 200 N+ ++ + T DRLF W FLV P IP+ W H Sbjct: 1423705 LIMLYGNT--ESASIRITLDRLF--------AVWKCSSFLVVPFEIPLSEWTH 1423833 >gb|GL376625.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582028, whole genome shotgun sequence Length = 960197 Score = 28.1 bits (61), Expect = 7.0 Identities = 16/53 (30%), Positives = 25/53 (47%) Frame = +3 Query: 168 RLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMRRQAA 220 R F +P++ H ++K LV G RW +SN +D++ Y R A Sbjct: 247026 RFFRDPLRRH-----YDKVLVLSRGACGHRWTRHFWISNEPVDLIQYKRSSTA 247169 Database: P.ultimum/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 42,801,618 Number of sequences in database: 82 Lambda K H 0.321 0.140 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,407,171 Number of Sequences: 82 Number of extensions: 154583 Number of successful extensions: 641 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 582 Number of HSP's gapped (non-prelim): 48 length of query: 226 length of database: 14,267,206 effective HSP length: 98 effective length of query: 128 effective length of database: 14,259,170 effective search space: 1825173760 effective search space used: 1825173760 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 60 (27.7 bits)