TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000006_1.0 # Protein # Glutathione peroxidase 3 (GPx3) #
Homo sapiens # Complete
         (226 letters)

Database: P.tricornutum/genome.fa 
           31 sequences; 23,733,684 total letters

Searching...............................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000620.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    88   3e-18
gb|CM000613.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    74   5e-14
gb|CM000614.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    28   5.2  
gb|CM000615.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    27   6.9  

>gb|CM000620.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 18, whole genome shotgun
              sequence
          Length = 702471

 Score = 88.2 bits (217), Expect = 3e-18
 Identities = 60/149 (40%), Positives = 74/149 (49%), Gaps = 2/149 (1%)
 Frame = +2

Query: 39     TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLTGQ-YIELNALQEELAPFGLVIL 97
              + Y     ++DGE  +P   + G   L VNVAS  GLT   Y +L  L +E    GL IL
Sbjct: 446483 SFYSCADKSMDGEA-VPMSSFEGNVCLVVNVASK*GLTKMNYTQLPQLVDEYGSRGLKIL 446659

Query: 98     GFPCNQFGKQEPGENSEILP-TLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSC 156
               FPCNQFG QEPG   EIL    KY +           FEK DVNG   ++ Y++LK +C
Sbjct: 446660 AFPCNQFGGQEPGSPEEILAFVAKYDKE---MAKKLVFFEKADVNGANTREVYSYLKKTC 446830

Query: 157    PPTSELLGTSDRLFWEPMKVHDIRWNFEK 185
              P      GT+           DIRWNF K
Sbjct: 446831 PNED---GTT-----------DIRWNFGK 446875


>gb|CM000613.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 10, whole genome
             shotgun sequence
          Length = 976485

 Score = 74.3 bits (181), Expect = 5e-14
 Identities = 59/166 (35%), Positives = 79/166 (47%), Gaps = 7/166 (4%)
 Frame = +2

Query: 35    GISG--TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLT-GQYIELNALQEELAP 91
             G+ G  + ++  A  IDG   I F+ + GK  +  NVASY G T   Y  L  L   ++ 
Sbjct: 34919 GLDGIESFFDLSAKDIDGNA-IAFESFRGKVTVLTNVASYCGYTESHYRGLVELWSVMSD 35095

Query: 92    FGLVILGFPCNQFGKQEPGENSEI--LPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFY 149
               + IL FPCNQFG QEP E  +I    + K VR        F++ EK +VNG    + Y
Sbjct: 35096 KAVEILAFPCNQFGAQEPEEADKIKDFASSKGVR--------FRIMEKINVNGPNAHQVY 35251

Query: 150   TFLK-NSCPPTSELLGTSDRLFWEPMKVHDIRWNF-EKFLVGPDGI 193
              +LK  + PPT                   I WNF   F+VGPDG+
Sbjct: 35252 KYLKAQAGPPT-------------------INWNFGTYFVVGPDGV 35332


>gb|CM000614.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 12, whole genome shotgun
              sequence
          Length = 901853

 Score = 27.7 bits (60), Expect = 5.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 159    TSELLGTSDRLFWEPMKVHDIRW 181
              TSEL+GT+    W P KV ++ W
Sbjct: 867172 TSELIGTNAVQHWSPQKVLNVCW 867240


>gb|CM000615.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 13, whole genome shotgun
              sequence
          Length = 887524

 Score = 27.3 bits (59), Expect = 6.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 102    NQFGKQEPGENSEILPTLKYVRPGGGFV 129
              N  G  +PG+NS ILP  +   P G FV
Sbjct: 150867 NDQG*LQPGQNSLILPATQGFEPSGRFV 150784


  Database: P.tricornutum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 23,733,684
  Number of sequences in database:  31
  
Lambda     K      H
   0.321    0.140    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,739,168
Number of Sequences: 31
Number of extensions: 100589
Number of successful extensions: 436
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 418
Number of HSP's gapped (non-prelim): 37
length of query: 226
length of database: 7,911,228
effective HSP length: 94
effective length of query: 132
effective length of database: 7,908,314
effective search space: 1043897448
effective search space used: 1043897448
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)