TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000006_1.0 # Protein # Glutathione peroxidase 3 (GPx3) #
Homo sapiens # Complete
         (226 letters)

Database: P.pallidum/genome.fa 
           42 sequences; 32,942,533 total letters

Searching..........................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL290996.1| Polysphondylium pallidum PN500 unplaced genomic s...    92   5e-20

>gb|GL290996.1| Polysphondylium pallidum PN500 unplaced genomic scaffold
             PPL_scaffold14, whole genome shotgun sequence
          Length = 1054919

 Score = 92.0 bits (227), Expect = 3e-19
 Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 30/162 (18%)
 Frame = +2

Query: 80    IELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEK-- 137
             I  N L E+      VILGFPC QF  Q PG   EIL TLKY+RPG GF P F +F K  
Sbjct: 66068 IGCNDLVEKFGTTEFVILGFPCAQFMNQSPGSGDEILLTLKYIRPGNGFQPAFPMFAKVN 66247

Query: 138   --------------------------GDVNGEKE--QKFYTFLKNSCPPTSELLGTSDRL 169
                                        +VNG+       + +LK+ C P ++ +  +  +
Sbjct: 66248 NNNSL*N**NLILMHFQPNFLYDPLQSNVNGDPSTVNPVFNWLKSGCGPITQTILETSLI 66427

Query: 170   FWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDI 211
              W P+  +DI WNFEKFLV   G    R+  +T    +  DI
Sbjct: 66428 SWTPVMTNDITWNFEKFLVSKTGQLYKRYSPQTLPELLAEDI 66553



 Score = 67.0 bits (162), Expect(2) = 5e-20
 Identities = 33/59 (55%), Positives = 37/59 (62%)
 Frame = +1

Query: 79    YIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEK 137
             +I  N L E+       ILGFPC+QF  Q PG + E L TLKYVRPG  FVPNF LF K
Sbjct: 68116 FIGCNELVEKYGTEEFAILGFPCSQFMNQAPGSDQEFLLTLKYVRPGDNFVPNFLLFTK 68292



 Score = 48.1 bits (113), Expect(2) = 5e-20
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
 Frame = +2

Query: 139   DVNGEKEQ--KFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIM 196
             +VNG+  Q    + +L++ C  TS+ +  +  + W P+  +DI WNFEKFLV   G  + 
Sbjct: 68378 NVNGDPSQISPVFQWLRSGCGATSQTIIDTSLISWTPVLTNDITWNFEKFLVSKTGQLVR 68557

Query: 197   RWHHRTTVSNVKMDI 211
             R+   T    +  DI
Sbjct: 68558 RYSPETFPQLLAEDI 68602


  Database: P.pallidum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 32,942,533
  Number of sequences in database:  42
  
Lambda     K      H
   0.321    0.140    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,064,110
Number of Sequences: 42
Number of extensions: 109978
Number of successful extensions: 375
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 370
Number of HSP's gapped (non-prelim): 9
length of query: 226
length of database: 10,980,844
effective HSP length: 97
effective length of query: 129
effective length of database: 10,976,770
effective search space: 1416003330
effective search space used: 1416003330
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)