TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000006_1.0 # Protein # Glutathione peroxidase 3 (GPx3) # Homo sapiens # Complete (226 letters) Database: N.gruberi/genome.fa 784 sequences; 40,964,085 total letters Searching....................................................done Score E Sequences producing significant alignments: (bits) Value gb|GG738879.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 94 8e-20 gb|GG738848.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 91 8e-19 gb|GG738855.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 71 7e-13 gb|GG738908.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 67 2e-11 gb|GG738853.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 49 3e-09 gb|GG738888.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 53 3e-07 gb|GG738919.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 28 5.1 gb|GG738852.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 28 5.1 >gb|GG738879.1| Naegleria gruberi genomic scaffold NAEGRscaffold_35, whole genome shotgun sequence Length = 384281 Score = 94.4 bits (233), Expect = 8e-20 Identities = 55/160 (34%), Positives = 77/160 (48%) Frame = +2 Query: 39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLTGQYIELNALQEELAPFGLVILG 98 ++Y++ L +DGEE + K Y+GK +L VN ASY G T Q L L E G +L Sbjct: 140765 SLYDFSVLNVDGEE-VSMKNYSGKVLLIVNTASYCGFTPQLGSLQRLYERFKSRGFEVLA 140941 Query: 99 FPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPP 158 FPCNQFG QEPG E+ + +F +F+K VNG+ + FLK+ Sbjct: 140942 FPCNQFGAQEPGNKQEVCSF-----AAEKYNVSFTIFDKVKVNGKDAVPLFKFLKSQS-- 141100 Query: 159 TSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRW 198 + D++WNF KFLV G + R+ Sbjct: 141101 -------------KGFLTSDVKWNFTKFLVDRSGKVVGRY 141181 >gb|GG738848.1| Naegleria gruberi genomic scaffold NAEGRscaffold_4, whole genome shotgun sequence Length = 712659 Score = 90.9 bits (224), Expect = 8e-19 Identities = 57/177 (32%), Positives = 80/177 (45%) Frame = -3 Query: 40 IYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLTGQYIELNALQEELAPFGLVILGF 99 IY + D E + +Y GK +L VNVAS G T QY +L + + G +L F Sbjct: 531028 IYSFSVKDADLNE-VSLSEYKGKVLLIVNVASKCGFTKQYDDLQEVYNKYKEQGFEVLAF 530852 Query: 100 PCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPT 159 PCNQFG QEPG N EI + F F++F+K +VNG Y +LK Sbjct: 530851 PCNQFGSQEPGTNEEICTFAR-----SKFKTTFKIFDKVEVNGSGTIPLYAYLKKE---- 530699 Query: 160 SELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMR 216 V ++WNF KFLV G + R+ T +++ DI ++ Sbjct: 530698 -----------GSGFLVDAVKWNFTKFLVSKSGKVLKRYSPTTNPKDLEDDIQKLLK 530561 >gb|GG738855.1| Naegleria gruberi genomic scaffold NAEGRscaffold_11, whole genome shotgun sequence Length = 613270 Score = 71.2 bits (173), Expect = 7e-13 Identities = 60/208 (28%), Positives = 80/208 (38%), Gaps = 33/208 (15%) Frame = -2 Query: 41 YEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLTGQYIELNALQEELAPFGLVILGFP 100 Y + G E + Y GK V+ VNVAS GLT QY L AL ++ G I+ FP Sbjct: 514602 YSFTVPDAQGNE-VSLSDYKGKVVMVVNVASSCGLTPQYEGLQALYDKYKDQGFEIIAFP 514426 Query: 101 CNQFGKQ---------------------------------EPGENSEILPTLKYVRPGGG 127 CNQF Q E G N EI + Sbjct: 514425 CNQFAFQVSF**NLNFE*VSNNFYYFYSTN*INLLIYSV*ERGSNDEICAFAR-----NK 514261 Query: 128 FVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFL 187 F +F++F K VNG + Y +LK +LF I+WNF KFL Sbjct: 514260 FKVSFKIFAKTHVNGSETIPLYKYLKKE---------GEGKLF------KAIKWNFTKFL 514126 Query: 188 VGPDGIPIMRWHHRTTVSNVKMDILSYM 215 V G + R+ T S ++ DI+ + Sbjct: 514125 VSKTGKVLKRYSPNTEPSEIEQDIVKLL 514042 >gb|GG738908.1| Naegleria gruberi genomic scaffold NAEGRscaffold_64, whole genome shotgun sequence Length = 259034 Score = 66.6 bits (161), Expect = 2e-11 Identities = 55/186 (29%), Positives = 70/186 (37%), Gaps = 28/186 (15%) Frame = +2 Query: 54 IPFKQYAGKYVLFVNVASYUGLTGQYIELNALQEELAPFGLVILGFPCNQFGKQ------ 107 + Y GK V+ VNVAS G T QY L L E+ GL IL FPCNQF Q Sbjct: 225395 VKLSDYKGKVVMVVNVASSCGKTPQYAGLQKLYEKYKDQGLEILAFPCNQFAFQVSCHPD 225574 Query: 108 ----------------------EPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKE 145 E G N EI + + F++F K VNG Sbjct: 225575 HQFNYFNDNYYSDQFNIIIN**ERGSNEEICTFTR-----DKYKVTFKMFAKTTVNGGDT 225739 Query: 146 QKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVS 205 Y +LK E + I+WNF KFLV G + R+ T Sbjct: 225740 IPLYQYLKKE---------------GEGSLFNAIKWNFTKFLVSKSGKVLQRYSPNTEPE 225874 Query: 206 NVKMDI 211 +++ DI Sbjct: 225875 DMEEDI 225892 >gb|GG738853.1| Naegleria gruberi genomic scaffold NAEGRscaffold_9, whole genome shotgun sequence Length = 695587 Score = 48.9 bits (115), Expect(2) = 3e-09 Identities = 36/118 (30%), Positives = 52/118 (44%) Frame = +1 Query: 107 QEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTS 166 QEPG N EI + F F++F+K +VNG + Y FLK Sbjct: 556429 QEPGTNEEICTFARTK-----FKVTFKIFDKINVNGSETIPLYNFLKKE----------- 556560 Query: 167 DRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMRRQAALGVK 224 V ++WNF KFLV G + R+ T+ +++ DI ++ AAL VK Sbjct: 556561 ----GAGFLVDAVKWNFTKFLVSKSGKVLKRYAPNTSPKDMEDDIQKLLKE*AALIVK 556722 Score = 29.6 bits (65), Expect(2) = 3e-09 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = +2 Query: 75 LTGQYIELNALQEELAPFGLVILGFPCNQFGKQ 107 LT E+ + + G +L FPCNQFG Q Sbjct: 556247 LTESIDEIQEVYNKYKDQGFEVLAFPCNQFGSQ 556345 >gb|GG738888.1| Naegleria gruberi genomic scaffold NAEGRscaffold_44, whole genome shotgun sequence Length = 351708 Score = 52.8 bits (125), Expect = 3e-07 Identities = 43/136 (31%), Positives = 59/136 (43%), Gaps = 4/136 (2%) Frame = -2 Query: 80 IELNALQEELAPFG----LVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLF 135 I L LQE +G ++ FP N F QE G EI K F F++ Sbjct: 156254 ILLEGLQELYDKYGKDGKFEVIAFPSNSFN-QEKGSTEEICAFTK-----DRFKVTFKIM 156093 Query: 136 EKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPI 195 EK +VNG+ Y FLK P LG+++ I+WNF KFL+ +G I Sbjct: 156092 EKIEVNGDNAHPIYQFLKQEGP--GGFLGSTN-----------IKWNFTKFLINKEGKVI 155952 Query: 196 MRWHHRTTVSNVKMDI 211 R+ T ++ DI Sbjct: 155951 GRYAPTTDPLSIAKDI 155904 >gb|GG738919.1| Naegleria gruberi genomic scaffold NAEGRscaffold_75, whole genome shotgun sequence Length = 216243 Score = 28.5 bits (62), Expect = 5.1 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Frame = +3 Query: 8 SCLLSLLLAGFVSQSRGQEKSKMDCHGGISGTIYE-YGALTIDGEEYIPFKQYAGKYVLF 66 +CL+ L++A +S +R + S ++ +S I+E Y L + EY P+ LF Sbjct: 37020 ACLVILIVAFHLSYTRVEYNSVVEASVRVSRGIHEYYSGLYVKLLEYAPWDSTLN---LF 37190 Query: 67 VNVASYUGLT 76 VNV G T Sbjct: 37191 VNVTYEDGTT 37220 >gb|GG738852.1| Naegleria gruberi genomic scaffold NAEGRscaffold_8, whole genome shotgun sequence Length = 938756 Score = 28.5 bits (62), Expect = 5.1 Identities = 16/35 (45%), Positives = 20/35 (57%) Frame = +1 Query: 67 VNVASYUGLTGQYIELNALQEELAPFGLVILGFPC 101 V V Y G+TG EL + +ELA FG+V F C Sbjct: 96796 VVVVEYVGVTGD--ELIGVDDELAGFGIVETDFGC 96894 Database: N.gruberi/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 40,964,085 Number of sequences in database: 784 Lambda K H 0.321 0.140 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,569,757 Number of Sequences: 784 Number of extensions: 149603 Number of successful extensions: 551 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 467 Number of HSP's gapped (non-prelim): 161 length of query: 226 length of database: 13,654,695 effective HSP length: 98 effective length of query: 128 effective length of database: 13,577,863 effective search space: 1737966464 effective search space used: 1737966464 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 60 (27.7 bits)