TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000006_1.0 # Protein # Glutathione peroxidase 3 (GPx3) # Homo sapiens # Complete (226 letters) Database: H.arabidopsidis/genome.fa 5422 sequences; 67,459,135 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABWE01000527.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 106 3e-23 gb|ABWE01000143.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 97 1e-20 gb|ABWE01000133.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 62 5e-10 >gb|ABWE01000527.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont57.15, whole genome shotgun sequence Length = 37660 Score = 106 bits (264), Expect = 3e-23 Identities = 62/162 (38%), Positives = 85/162 (52%), Gaps = 13/162 (8%) Frame = +3 Query: 39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUG-LTGQYIELNALQEELAPFGLVIL 97 T++ + ++ G + + +YAGK +L VNVAS+ T Y++LN L + LVIL Sbjct: 33843 TVHSFSFRSLTGSKVLRLSEYAGKPILIVNVASHCNSTTTAYVQLNDLSQRFPE--LVIL 34016 Query: 98 GFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCP 157 G PCNQFG QE EI +L++VRPG GF P F L EK +VNG + FL+ + P Sbjct: 34017 GCPCNQFGHQENLNGDEIYQSLRHVRPGKGFEPAFPLTEKVEVNGANAHAVFNFLRMALP 34196 Query: 158 ------------PTSELLGTSDRLFWEPMKVHDIRWNFEKFL 187 S + RL W P+ D+ WNFEK L Sbjct: 34197 YPCDRTLLDEMTTPSGVFSHPMRLVWMPVTRADVSWNFEKVL 34322 >gb|ABWE01000143.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont89.4, whole genome shotgun sequence Length = 70907 Score = 97.4 bits (241), Expect = 1e-20 Identities = 63/161 (39%), Positives = 83/161 (51%), Gaps = 1/161 (0%) Frame = +1 Query: 39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLTG-QYIELNALQEELAPFGLVIL 97 + YE +D +E + ++Y GK +L VNV+S GLT Y EL L E+ GLV+L Sbjct: 29233 SFYELRDFDMDKKE-VSMEEYKGKVILVVNVSSKCGLTPTNYPELQQLYEKYQEEGLVVL 29409 Query: 98 GFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCP 157 GFPCNQF QEPG + EI +K + F LFEK DVNG + +T+LK P Sbjct: 29410 GFPCNQFKSQEPGTHEEIKEFVKQ------YKVTFPLFEKHDVNGSNARPVFTYLKAKLP 29571 Query: 158 PTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRW 198 T + I+WNF KFLV +G P R+ Sbjct: 29572 GTFG---------------NYIKWNFTKFLVDRNGQPYKRY 29649 Score = 96.7 bits (239), Expect = 2e-20 Identities = 63/182 (34%), Positives = 92/182 (50%), Gaps = 1/182 (0%) Frame = +2 Query: 39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLTGQ-YIELNALQEELAPFGLVIL 97 + YE + +DG E +P +Y GK VL VNV+S GLT + Y EL L E+ GL +L Sbjct: 22496 SFYELKDVDMDGNE-VPMSKYKGKVVLAVNVSSKCGLTPKNYPELQQLYEKYQAEGLEVL 22672 Query: 98 GFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCP 157 FPCNQF QEPG + EI+ +K + F F+K DVNG + +++LK P Sbjct: 22673 AFPCNQFAGQEPGTHKEIMDFVKQ------YNVTFPFFKKDDVNGATARPVFSYLKTKLP 22834 Query: 158 PTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMRR 217 T ++WNF KFLV +G P R+ + ++ DI + + + Sbjct: 22835 GTFG---------------DFVKWNFTKFLVDRNGRPYKRFAPKERPLTMEEDIKTLLAQ 22969 Query: 218 QA 219 +A Sbjct: 22970 KA 22975 Score = 45.4 bits (106), Expect = 6e-05 Identities = 50/187 (26%), Positives = 72/187 (38%), Gaps = 2/187 (1%) Frame = +2 Query: 37 SGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNV--ASYUGLTGQYIELNALQEELAPFGL 94 S ++Y L G Y G L NV S Q EL L E GL Sbjct: 31643 SASLYALRDLDAKGSIY-NLSDLRGHVALLTNVPNGSCSSDAKQLSELVHLSTEYEDAGL 31819 Query: 95 VILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKN 154 ++ FP QFG E + E++ + + F F + DVNG + F K Sbjct: 31820 KVVAFPSAQFGDAEFDTDEELVEHFRDL-----FGVEFLVLATRDVNGPNARDAMVFCKT 31984 Query: 155 SCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSY 214 P S+ ++ F E NF KFLVG DG + R+ R + ++ DI + Sbjct: 31985 RLPGASK---SAANAFLEN--------NFVKFLVGRDGQVVKRYTPRDSPLSMVTDIQTL 32131 Query: 215 MRRQAAL 221 ++ L Sbjct: 32132 LKEPPPL 32152 >gb|ABWE01000133.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont13.26, whole genome shotgun sequence Length = 72526 Score = 62.4 bits (150), Expect = 5e-10 Identities = 46/154 (29%), Positives = 67/154 (43%), Gaps = 26/154 (16%) Frame = -1 Query: 85 LQEELAPFGLVILGFPCNQFGKQEPGENSEIL-----------PTLKYVRPGGGFVPNFQ 133 L E+ G ++LGFPCNQFG QEPG N +I+ P V G G + ++ Sbjct: 14152 LYEKYHDEGFMVLGFPCNQFGGQEPGTNDDIMKFTKEKYHVTFPLFTKVHQG*GEISKYE 13973 Query: 134 LFEKG---------------DVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHD 178 EKG DVNG+K + FLK + +D Sbjct: 13972 R-EKGGC*CLIIYMLRHV*VDVNGDKAHPLFQFLKKRL---------------DGFVTND 13841 Query: 179 IRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDIL 212 I+WNF KFL+ + P+ R+ T+ ++ DI+ Sbjct: 13840 IKWNFTKFLI-VNHEPVKRYGTTTSPLEIEKDIM 13742 Database: H.arabidopsidis/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 67,459,135 Number of sequences in database: 5422 Lambda K H 0.321 0.140 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,722,039 Number of Sequences: 5422 Number of extensions: 241946 Number of successful extensions: 897 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 258 Number of HSP's successfully gapped in prelim test: 50 Number of HSP's that attempted gapping in prelim test: 612 Number of HSP's gapped (non-prelim): 385 length of query: 226 length of database: 22,486,378 effective HSP length: 101 effective length of query: 125 effective length of database: 21,938,756 effective search space: 2742344500 effective search space used: 2742344500 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 61 (28.1 bits)