TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000006_1.0 # Protein # Glutathione peroxidase 3 (GPx3) #
Homo sapiens # Complete
         (226 letters)

Database: E.siliculosus/genome.fa 
           35 sequences; 195,934,119 total letters

Searching...................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|FN649728.1| Ectocarpus siliculosus strain Ec 32, whole genom...    39   0.013
emb|FN649731.1| Ectocarpus siliculosus strain Ec 32, whole genom...    35   0.18 
emb|FN649742.1| Ectocarpus siliculosus strain Ec 32, whole genom...    35   0.18 
emb|FN649760.1| Ectocarpus siliculosus strain Ec 32, whole genom...    32   2.0  
emb|FN649752.1| Ectocarpus siliculosus strain Ec 32, whole genom...    31   4.5  
emb|FN649741.1| Ectocarpus siliculosus strain Ec 32, whole genom...    30   7.7  

>emb|FN649728.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG03
          Length = 7313625

 Score = 39.3 bits (90), Expect = 0.013
 Identities = 23/43 (53%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 66      FVNVASYUGLTGQ-YIELNALQEELAPFGLVILGFPCNQFGKQ 107
               F   ++  GLT Q Y EL AL  + A  GL ILGFP NQFG Q
Sbjct: 1716556 FATFSAPQGLTAQNYAELAALYGKYAGRGLEILGFPSNQFGSQ 1716684



 Score = 35.8 bits (81), Expect = 0.14
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -2

Query: 66      FVNVASYUGLTGQ-YIELNALQEELAPFGLVILGFPCNQFGKQ 107
               F   ++  GLT Q Y EL AL  + A  GL ILGFP N+F  +
Sbjct: 1726685 FATFSAPKGLTAQNYAELAALYGKYAGLGLEILGFPSNEFASE 1726557


>emb|FN649731.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG06
          Length = 3939081

 Score = 35.4 bits (80), Expect = 0.18
 Identities = 15/22 (68%), Positives = 16/22 (72%)
 Frame = -3

Query: 94      LVILGFPCNQFGKQEPGENSEI 115
               L I+ FPCNQFG QEPG   EI
Sbjct: 2884222 LAIVAFPCNQFGGQEPGSWQEI 2884157


>emb|FN649742.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG17
          Length = 5807719

 Score = 35.4 bits (80), Expect = 0.18
 Identities = 15/22 (68%), Positives = 16/22 (72%)
 Frame = +2

Query: 94      LVILGFPCNQFGKQEPGENSEI 115
               L I+ FPCNQFG QEPG   EI
Sbjct: 2178299 LAIVAFPCNQFGAQEPGTWEEI 2178364


>emb|FN649760.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly,
                unassigned sequences LGUn
          Length = 58155991

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +1

Query: 75       LTGQYIELNALQEELAPFGLVILGFPCNQFGKQE 108
                LT Q  EL  + +     GLV+LG P N FG QE
Sbjct: 45720604 LTPQLKELELVHKRFRGEGLVVLGVPSNDFGAQE 45720705


>emb|FN649752.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG27
          Length = 4309624

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 3       RLLQASCLLSLLLAGFVSQSRGQEKSKMDC 32
               R L  SCLL+L L G+  QSRG   ++  C
Sbjct: 4064246 RYLMLSCLLALQLDGYCRQSRGASLTRFKC 4064157


>emb|FN649741.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG16
          Length = 8064047

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 21/62 (33%), Positives = 28/62 (45%)
 Frame = -3

Query: 162     LLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMRRQAAL 221
               LLG+ D+ +W P  VH       +   G  G    R H R   S + +D+ S   R  AL
Sbjct: 7757985 LLGSKDQPYWLPHLVH*PA*GDGRMWHGGGGCG--RTHSRACRSGLTIDLASLQSRDGAL 7757812

Query: 222     GV 223
               GV
Sbjct: 7757811 GV 7757806


  Database: E.siliculosus/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 195,934,119
  Number of sequences in database:  35
  
Lambda     K      H
   0.321    0.140    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,875,258
Number of Sequences: 35
Number of extensions: 939879
Number of successful extensions: 3956
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3796
Number of HSP's gapped (non-prelim): 956
length of query: 226
length of database: 65,311,373
effective HSP length: 109
effective length of query: 117
effective length of database: 65,307,558
effective search space: 7640984286
effective search space used: 7640984286
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)