TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000006_1.0 # Protein # Glutathione peroxidase 3 (GPx3) #
Homo sapiens # Complete
         (226 letters)

Database: C.parvum/genome.fa 
           8 sequences; 9,102,324 total letters

Searching........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whol...    58   1e-09
gb|CM000429.1| Cryptosporidium parvum Iowa II chromosome 1, whol...    26   8.0  

>gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whole genome shotgun
              sequence
          Length = 1099352

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 47/157 (29%), Positives = 67/157 (42%), Gaps = 1/157 (0%)
 Frame = +1

Query: 37     SGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLTGQYI-ELNALQEELAPFGLV 95
              S ++Y Y   T++G  + P +   GK V+  NVAS  G T  Y  ++  +    AP GL 
Sbjct: 141775 SKSVYSYTLTTLEGNPF-PMESLKGKVVMVTNVASKCGYTKSYYKQMVRIYSVFAPLGLE 141951

Query: 96     ILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNS 155
              I+G P  +F  QE  +  EI       +        F L E   VNG    +F   LK  
Sbjct: 141952 IIGLPSREFMGQEFEDPKEIR------KFADSHNVKFPLMEICKVNGPDALEFVQKLKRE 142113

Query: 156    CPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDG 192
               P   EL             +  I+WNF +FL+  +G
Sbjct: 142114 TP---ELYDEKSN------TLSAIKWNFSRFLIDKNG 142197



 Score = 26.6 bits (57), Expect = 4.7
 Identities = 31/85 (36%), Positives = 34/85 (40%), Gaps = 10/85 (11%)
 Frame = +2

Query: 91     PFGLVILG---FPCN---QFGKQEPGENSEILP----TLKYVRPGGGFVPNFQLFEKGDV 140
              P G V+ G   +P     Q G   P  NS I P    T   V PGGG  P   L      
Sbjct: 888470 PLGGVLTGDILYPSGKTIQSGTSLPS-NSYIKPNALLTNGLVLPGGGIFPGGILIP---- 888634

Query: 141    NGEKEQKFYTFLKNSCPPTSELLGT 165
              NG+  Q          PPTS LLGT
Sbjct: 888635 NGQFVQPMSVPPGTMFPPTSTLLGT 888709


>gb|CM000429.1| Cryptosporidium parvum Iowa II chromosome 1, whole genome shotgun
              sequence
          Length = 875659

 Score = 25.8 bits (55), Expect = 8.0
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 35     GISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLTGQYIEL 82
              G+   I++YG + +D EEY     Y  +Y+L + + S   L   Y EL
Sbjct: 414347 GVLWPIFKYGEIRLDSEEY-----YEDEYILPL-IDSSKKLLNVYYEL 414472


  Database: C.parvum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,102,324
  Number of sequences in database:  8
  
Lambda     K      H
   0.321    0.140    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,242,236
Number of Sequences: 8
Number of extensions: 31705
Number of successful extensions: 107
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 103
Number of HSP's gapped (non-prelim): 16
length of query: 226
length of database: 3,034,108
effective HSP length: 88
effective length of query: 138
effective length of database: 3,033,404
effective search space: 418609752
effective search space used: 418609752
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)