TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000006_1.0 # Protein # Glutathione peroxidase 3 (GPx3) #
Homo sapiens # Complete
         (226 letters)

Database: C.owczarzaki/genome.fa 
           89 sequences; 28,043,798 total letters

Searching........................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercontig_1.1 of Capsaspora owczarzaki ATCC 30864                    29   2.7  
supercontig_1.8 of Capsaspora owczarzaki ATCC 30864                    28   3.6  

>supercontig_1.1 of Capsaspora owczarzaki ATCC 30864
          Length = 3794667

 Score = 28.9 bits (63), Expect = 2.7
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 185     KFLVGPDGIPIMRWHHRTTVSNVKMDIL 212
               KF++ PDG+PI    +  +  NVK+D++
Sbjct: 3433082 KFVMSPDGVPIAFRSYLPSPENVKLDVV 3432999


>supercontig_1.8 of Capsaspora owczarzaki ATCC 30864
          Length = 1512001

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 18      FVSQSRGQEKSKMDCHGGISGT 39
               F SQ R QE + +DC GG+S T
Sbjct: 1079131 F*SQQRKQESADLDCFGGVSET 1079196


  Database: C.owczarzaki/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,043,798
  Number of sequences in database:  89
  
Lambda     K      H
   0.321    0.140    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,893,324
Number of Sequences: 89
Number of extensions: 109408
Number of successful extensions: 484
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 462
Number of HSP's gapped (non-prelim): 79
length of query: 226
length of database: 9,347,932
effective HSP length: 96
effective length of query: 130
effective length of database: 9,339,388
effective search space: 1214120440
effective search space used: 1214120440
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)