TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000006_1.0 # Protein # Glutathione peroxidase 3 (GPx3) #
Homo sapiens # Complete
         (226 letters)

Database: C.muris/genome.fa 
           84 sequences; 9,245,251 total letters

Searching...................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DS989726.1| Cryptosporidium muris RN66 scf_1106632373453 geno...    65   1e-11

>gb|DS989726.1| Cryptosporidium muris RN66 scf_1106632373453 genomic scaffold, whole
              genome shotgun sequence
          Length = 1324930

 Score = 65.1 bits (157), Expect = 1e-11
 Identities = 48/155 (30%), Positives = 70/155 (45%), Gaps = 1/155 (0%)
 Frame = -3

Query: 39     TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLTGQYI-ELNALQEELAPFGLVIL 97
              + Y+Y   T++GE Y P     GK V+  NVAS  G + +Y  ++  +    APFG  IL
Sbjct: 165518 SFYDYTLKTLEGELY-PLSSLKGKVVMITNVASKCGYSYKYYNQMVRMHSVFAPFGFEIL 165342

Query: 98     GFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCP 157
                P  +F +QE  +  +I   +        F   F + E  +VNGE       FLK + P
Sbjct: 165341 AIPSREFLRQEYLDPKDIRKAIN------SFNVEFPVMELSNVNGENALDLINFLKFNTP 165180

Query: 158    PTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDG 192
                 EL   +        ++  I WNF +FLV   G
Sbjct: 165179 ---ELYDRNKN------ELKAISWNFSRFLVNKSG 165102


  Database: C.muris/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,245,251
  Number of sequences in database:  84
  
Lambda     K      H
   0.321    0.140    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,235,360
Number of Sequences: 84
Number of extensions: 31132
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 9
length of query: 226
length of database: 3,081,750
effective HSP length: 88
effective length of query: 138
effective length of database: 3,074,358
effective search space: 424261404
effective search space used: 424261404
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)