TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000006_1.0 # Protein # Glutathione peroxidase 3 (GPx3) #
Homo sapiens # Complete
         (226 letters)

Database: C.merolae/genome.fa 
           20 sequences; 16,546,747 total letters

Searching....................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|AP006494.2| Cyanidioschyzon merolae DNA, chromosome 12, comp...    30   0.98 
dbj|AP006485.2| Cyanidioschyzon merolae DNA, chromosome 3, compl...    27   4.8  
dbj|AP006487.2| Cyanidioschyzon merolae DNA, chromosome 5, compl...    27   8.3  

>dbj|AP006494.2| Cyanidioschyzon merolae DNA, chromosome 12, complete genome, complete
              sequence
          Length = 859119

 Score = 29.6 bits (65), Expect = 0.98
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -3

Query: 144    KEQKFYTFLKNSCPPT-SELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGI 193
              ++  F T + NS P T S    TSDRL++EP+ + D+    E     PDGI
Sbjct: 114562 RDAGFETIMVNSNPETVSTDYDTSDRLYFEPLTLEDVISILE--AEKPDGI 114416


>dbj|AP006485.2| Cyanidioschyzon merolae DNA, chromosome 3, complete genome, complete
              sequence
          Length = 481791

 Score = 27.3 bits (59), Expect = 4.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 166    SDRLFWEPMKVHDIRWNFEKFLVG 189
              SDR+FWEP  +  IR   +K   G
Sbjct: 435444 SDRIFWEPTPLPSIRGRVQKVAFG 435373


>dbj|AP006487.2| Cyanidioschyzon merolae DNA, chromosome 5, complete genome, complete
              sequence
          Length = 528682

 Score = 26.6 bits (57), Expect = 8.3
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = -2

Query: 125    GGGFVPNF---QLFEKGDVNG-EKEQKFYTFLKNSCPPTS 160
              GG   P+F     F K D +G  +EQ+FY  +   C P+S
Sbjct: 466602 GGAARPSFVTAYTFSKQDNSGISREQEFYAVVHQECTPSS 466483


  Database: C.merolae/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 16,546,747
  Number of sequences in database:  20
  
Lambda     K      H
   0.321    0.140    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,536,131
Number of Sequences: 20
Number of extensions: 62871
Number of successful extensions: 296
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 292
Number of HSP's gapped (non-prelim): 25
length of query: 226
length of database: 5,515,582
effective HSP length: 92
effective length of query: 134
effective length of database: 5,513,742
effective search space: 738841428
effective search space used: 738841428
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)