TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000005_1.0 # Protein # Glutathione peroxidase 2 (GPx2) # Homo sapiens # Complete (190 letters) Database: T.trahens/genome.fa 131 sequences; 28,680,627 total letters Searching.................................................................done Score E Sequences producing significant alignments: (bits) Value gb|GL349469.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 132 2e-31 gb|GL349472.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 87 8e-18 gb|GL349473.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 75 3e-14 gb|GL349489.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 70 6e-13 gb|GL349444.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 54 5e-08 >gb|GL349469.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.37, whole genome shotgun sequence Length = 357088 Score = 132 bits (331), Expect = 2e-31 Identities = 73/183 (39%), Positives = 104/183 (56%), Gaps = 3/183 (1%) Frame = +2 Query: 8 FYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVLGF 66 F+ S+ + G DF+ +G+ VL NVAS G T ++ LN L ++ R V+GF Sbjct: 86435 FFSYSSTDIHGNTYDFSQLKGKVVLAVNVASY*GLTIPNYNALNSLMTKYANRGFTVIGF 86614 Query: 67 PCNQFGHQE-NCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPY 125 PC QF +Q+ +++IL+ LKYVRPGGG+ F L+ K +VNG + PV+AYL P Sbjct: 86615 PCAQFDNQQPEFTSQQILDGLKYVRPGGGFVANFPLMAKSDVNGASRSPVYAYLTGACPQ 86794 Query: 126 PYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPE-GEPFRRYSRTFPTINIEPDIKR 184 P L I W+P+R +D+ WNF+K+LI P+ G P YS +I DI+ Sbjct: 86795 PMP---ILEPSTAYISWAPIRPTDITWNFQKYLIHPDTGRPVSVYSPDTLPSDIAADIEA 86965 Query: 185 LLK 187 LLK Sbjct: 86966 LLK 86974 >gb|GL349472.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.40, whole genome shotgun sequence Length = 338342 Score = 86.7 bits (213), Expect = 8e-18 Identities = 57/169 (33%), Positives = 79/169 (46%), Gaps = 4/169 (2%) Frame = -2 Query: 7 SFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVLG 65 + YD S +L E DF RG+ V++ NVAS G T + L +L RF + LV++G Sbjct: 84664 TLYDFSMDTLFHEPFDFGALRGKVVIVTNVASF*GLTESRYKGLVDLHNRFHEQGLVIVG 84485 Query: 66 FPCNQFGHQENCQNE---EILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDK 122 PCNQFG+QE E E++ L G F L+ K EVNG HP++ + K + Sbjct: 84484 VPCNQFGNQEPFDAENPNELIAFLDDKDWGVSAAVDFLLMTKYEVNGAGAHPLYRWAKSQ 84305 Query: 123 LPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSR 171 L + + WNF F+ +GEP RRY R Sbjct: 84304 L-------------------KSTLGTSIKWNFTHFVFNAKGEPVRRYGR 84215 Score = 60.1 bits (144), Expect = 8e-10 Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 2/118 (1%) Frame = -3 Query: 7 SFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVLG 65 S Y +LDG+ DF+ G+ V++ N+ + F QL + + + L+VLG Sbjct: 82605 SLYQFEMTTLDGDAYDFSALHGKVVIVTNIGTRSKLAESRFLQLQAIHELYSEQGLIVLG 82426 Query: 66 FPCN-QFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDK 122 P +F E EI + Y TF L+Q VNG + HP+FA++KDK Sbjct: 82425 VPSTGEFDAAEPSSAAEIRSI------ANSYGVTFQLLQAAAVNGSDAHPLFAWIKDK 82270 >gb|GL349473.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.41, whole genome shotgun sequence Length = 350512 Score = 74.7 bits (182), Expect = 3e-14 Identities = 42/116 (36%), Positives = 63/116 (54%), Gaps = 3/116 (2%) Frame = +2 Query: 70 QFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDD 129 Q G QEN ++ EILN +YVRPG GY+P F + K +V G N + A L +LP ++ Sbjct: 32105 QHGLQENARDVEILNMYRYVRPGNGYEPNFPITTKMDVVGPN-GGLMAELAAQLPLKPEN 32281 Query: 130 P---FSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDI 182 P + + T P + V + WNF L+GP+G P +RY +P++ D+ Sbjct: 32282 PNRRYLVDTTPCGLKTKKVSSKTIEWNFGMILVGPDGTPLKRY---YPSVKPTDDV 32440 Score = 33.9 bits (76), Expect = 0.064 Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Frame = +1 Query: 27 RGRAVLIENVASLUGTTTRDFTQLNELQCRF-PRRLVVLGFPCNQ 70 R AVL+ N+A+L G T QLNELQ F V P NQ Sbjct: 31645 RDTAVLLVNIAAL*GLTAEQMPQLNELQTMFEDHPFTVWAIPANQ 31779 >gb|GL349489.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.57, whole genome shotgun sequence Length = 255174 Score = 70.5 bits (171), Expect = 6e-13 Identities = 52/177 (29%), Positives = 79/177 (44%) Frame = +2 Query: 13 AISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRRLVVLGFPCNQFG 72 + +++G +V +++ G VL+ NVAS G T +T+L L P+ L ++GFP N+FG Sbjct: 241577 SFAMNGREVLLSSYAGSPVLVVNVASECGLTEYMYTRLVRLARAAPQ-LRIIGFPSNEFG 241753 Query: 73 HQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFS 132 QE + I + Y+ TF L K EVNG HPVF +L Sbjct: 241754 GQEPRSSSAIRAEM-----AAAYRVTFPLADKIEVNGARAHPVFKWLV------------ 241882 Query: 133 LMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLKVA 189 + D+AWNF FL+ +G R+ P IE + ++ A Sbjct: 241883 ----------AESGGEDIAWNFTVFLVNGDGRLEGRFEPGEPFEAIEAAVAGMMAEA 242023 >gb|GL349444.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.12, whole genome shotgun sequence Length = 562821 Score = 54.3 bits (129), Expect = 5e-08 Identities = 38/117 (32%), Positives = 52/117 (44%) Frame = +1 Query: 70 QFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDD 129 QFG QE NEEIL + Y F L K +VNG N P++ YLK + Sbjct: 515614 QFGGQEPGTNEEILEFV------ARYNVQFPLFDKIDVNGSNAAPLYRYLKAQS------ 515757 Query: 130 PFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLL 186 S + + V WNFE F++ +G R+ T +++E DI RLL Sbjct: 515758 -------------STLFMTRVKWNFETFVVDADGHVVSRHLPTVSPLSLEDDIVRLL 515889 Score = 45.8 bits (107), Expect = 2e-05 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 1/66 (1%) Frame = +2 Query: 5 AKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRF-PRRLVV 63 A+S YD + + GE++ T++ +LI NVAS G T +TQL L + R + Sbjct: 514928 AESIYDFTVKDIHGEEISLATYKDTVLLITNVASK*GLTDARYTQLVTLHEKLRDRNFNI 515107 Query: 64 LGFPCN 69 L FPCN Sbjct: 515108 LAFPCN 515125 Database: T.trahens/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 28,680,627 Number of sequences in database: 131 Lambda K H 0.323 0.141 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,711,415 Number of Sequences: 131 Number of extensions: 114932 Number of successful extensions: 351 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 324 Number of HSP's gapped (non-prelim): 22 length of query: 190 length of database: 9,560,209 effective HSP length: 94 effective length of query: 96 effective length of database: 9,547,895 effective search space: 916597920 effective search space used: 916597920 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 57 (26.6 bits)