TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000005_1.0 # Protein # Glutathione peroxidase 2 (GPx2) # Homo sapiens # Complete (190 letters) Database: S.parasitica/genome.fa 1445 sequences; 53,132,636 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gb|GG743886.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 123 1e-28 gb|GG743915.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 96 2e-20 gb|GG744085.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 62 3e-10 gb|GG743889.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 30 1.3 gb|GG744744.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 29 2.8 gb|GG743900.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 28 8.1 >gb|GG743886.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.4, whole genome shotgun sequence Length = 1210272 Score = 123 bits (309), Expect = 1e-28 Identities = 73/187 (39%), Positives = 100/187 (53%), Gaps = 1/187 (0%) Frame = -2 Query: 4 IAKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRF-PRRLV 62 +AKSF++L + + G V T+RGR L+ NVAS G T ++TQL EL ++ R L Sbjct: 1162403 LAKSFFELESYDMQGHCVPMETYRGRVCLVVNVASA*GLTKLNYTQLVELDNKYRDRGLQ 1162224 Query: 63 VLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDK 122 +L +PCNQFG QE NEEI+ + G+ TF +K +VNG N PV+AYLK K Sbjct: 1162223 ILAYPCNQFGGQEPGTNEEIMAFV------AGFNATFPFFEKADVNGDNTQPVYAYLKSK 1162062 Query: 123 LPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDI 182 L + S + WNF KFL+ G+PF+RYS ++ E DI Sbjct: 1162061 L-------------------TGTLGSAIKWNFTKFLVDRNGQPFKRYSPQTAPMDFEADI 1161939 Query: 183 KRLLKVA 189 +LL A Sbjct: 1161938 LQLLDQA 1161918 Score = 117 bits (292), Expect = 1e-26 Identities = 68/183 (37%), Positives = 98/183 (53%), Gaps = 1/183 (0%) Frame = -2 Query: 5 AKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVV 63 AKSF+DL + ++DG++V TFRGR L+ NVAS G T ++TQL +L + R L + Sbjct: 1158845 AKSFFDLGSNNMDGQRVPMATFRGRVCLVVNVASA*GLTKVNYTQLVQLDDKLRERGLQI 1158666 Query: 64 LGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKL 123 L +PCNQFG QE N EI+ + + F L +K +VNG++ V+A+LKD+L Sbjct: 1158665 LAYPCNQFGGQEPGTNAEIMAFV------AKFGVRFPLFEKADVNGEHTQEVYAFLKDRL 1158504 Query: 124 PYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIK 183 P D+ WNF KFL+ G+P +RY ++E DI+ Sbjct: 1158503 P-----------------------GDITWNFAKFLVDRHGQPVKRYDPNVAPFDLEADIE 1158393 Query: 184 RLL 186 LL Sbjct: 1158392 ALL 1158384 Score = 98.6 bits (244), Expect = 4e-21 Identities = 64/184 (34%), Positives = 93/184 (50%), Gaps = 2/184 (1%) Frame = -3 Query: 5 AKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTR-DFTQLNELQCRF-PRRLV 62 A SFY+LS+ + DG ++ F R L+ NVA + + ++TQL EL R+ R L Sbjct: 1159945 ASSFYELSSKNTDGVEISMAKFTSRVCLVVNVAGAS*SQAQLNYTQLVELDRRYRDRGLQ 1159766 Query: 63 VLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDK 122 +L +PCNQF +QE N+EIL + + TF +++K +VNG PVF YLK K Sbjct: 1159765 ILLYPCNQFANQEPGTNDEILAFAR------SFGVTFPVMEKADVNGSKTQPVFKYLKSK 1159604 Query: 123 LPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDI 182 L + S + WN+ KFLI G+P++R+ P I + DI Sbjct: 1159603 LRGTFT-------------------STIKWNYTKFLIDRNGQPYKRFGTFTPPIKLIDDI 1159481 Query: 183 KRLL 186 LL Sbjct: 1159480 LDLL 1159469 >gb|GG743915.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.33, whole genome shotgun sequence Length = 345601 Score = 95.9 bits (237), Expect = 2e-20 Identities = 65/180 (36%), Positives = 82/180 (45%), Gaps = 1/180 (0%) Frame = +1 Query: 8 FYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRF-PRRLVVLGF 66 F D +A+S G V F G L+ NVAS G T ++T L EL RF P L +L F Sbjct: 140359 FADSTALSPSGSTVSMAAFAGSVCLVVNVASQ*GLATLNYTHLAELDRRFRPLGLRILAF 140538 Query: 67 PCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYP 126 PCNQF QE EI G+ TF + K +VNG PVF LK L Sbjct: 140539 PCNQFAGQEPGSEREIREF------ANGFGATFPIFAKGDVNGAKTQPVFRSLKAHL--- 140691 Query: 127 YDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLL 186 + + + WNF KFL+ G+PF+RYS T P + + DI LL Sbjct: 140692 ----------------TGTLGASIKWNFTKFLVRRNGQPFKRYSPTTPPLRLLDDILMLL 140823 >gb|GG744085.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.203, whole genome shotgun sequence Length = 29623 Score = 62.4 bits (150), Expect = 3e-10 Identities = 47/139 (33%), Positives = 61/139 (43%), Gaps = 13/139 (9%) Frame = +1 Query: 61 LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQK-------------CEV 107 L +LGFPCNQFG QE +IL + Y TF + QK +V Sbjct: 21913 LEILGFPCNQFGAQEPGSMRDILALTHH------YDVTFPIFQKVRSMAWAQLGMD*VDV 22074 Query: 108 NGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFR 167 NG + PVFAYL L + +DV WNF KFL+ G+P+ Sbjct: 22075 NGHDADPVFAYLTSVL-------------------AGSITNDVKWNFSKFLLA-HGQPYA 22194 Query: 168 RYSRTFPTINIEPDIKRLL 186 RY+ T +IE I R+L Sbjct: 22195 RYAPTTSPASIEDAIVRIL 22251 >gb|GG743889.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.7, whole genome shotgun sequence Length = 943373 Score = 30.4 bits (67), Expect = 1.3 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Frame = -2 Query: 59 RRLVVLGFPCNQFGHQENCQNEEILN-SLKYVRPGGG 94 RRL VL PC FG E +N + L L +V PGGG Sbjct: 118093 RRLEVLPVPCLGFGTPEEMRNVDRLRLELVHVVPGGG 117983 >gb|GG744744.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.862, whole genome shotgun sequence Length = 3000 Score = 29.3 bits (64), Expect = 2.8 Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 8/93 (8%) Frame = +1 Query: 29 RAVLIENVASLUGTTTRDFTQLNELQCRFPRRLVVLGFPCNQFGHQ-----ENCQNEEIL 83 RA EN+ + T RD ++ L C + RR L CNQ H ++C NE Sbjct: 1237 RATF*ENIRASRNRTGRDPVGMSGLWCVWLRRFQWLRCFCNQHSHYMRFFLKSCSNE--Y 1410 Query: 84 NSLKYV---RPGGGYQPTFTLVQKCEVNGQNEH 113 +S Y R +PT TL C+V H Sbjct: 1411 SSTHYTW*SRMVLSQEPT-TLCSYCDVGSLVYH 1506 >gb|GG743900.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.18, whole genome shotgun sequence Length = 504189 Score = 27.7 bits (60), Expect = 8.1 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%) Frame = -3 Query: 151 AWNF--EKFLIGPEGEPFRRYSRTFPTINIEPDIKRL 185 AW+F + +G G P + SRTF + +EP ++RL Sbjct: 7411 AWDFMAQ*RTMGSLGFPRSKTSRTFKLVRLEPSVQRL 7301 Database: S.parasitica/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 53,132,636 Number of sequences in database: 1445 Lambda K H 0.323 0.141 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,205,520 Number of Sequences: 1445 Number of extensions: 195152 Number of successful extensions: 748 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 22 Number of HSP's that attempted gapping in prelim test: 566 Number of HSP's gapped (non-prelim): 310 length of query: 190 length of database: 17,710,878 effective HSP length: 98 effective length of query: 92 effective length of database: 17,569,268 effective search space: 1616372656 effective search space used: 1616372656 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 59 (27.3 bits)