TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000005_1.0 # Protein # Glutathione peroxidase 2 (GPx2) # Homo sapiens # Complete (190 letters) Database: P.ultimum/genome.fa 82 sequences; 42,801,618 total letters Searching.................................................................................done Score E Sequences producing significant alignments: (bits) Value gb|GL376611.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 162 1e-40 gb|GL376564.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 113 9e-26 gb|GL376617.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 62 2e-10 gb|GL376629.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 53 1e-07 gb|GL376620.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 31 0.61 >gb|GL376611.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582014, whole genome shotgun sequence Length = 494327 Score = 162 bits (411), Expect = 1e-40 Identities = 90/218 (41%), Positives = 124/218 (56%), Gaps = 35/218 (16%) Frame = +2 Query: 6 KSFYDLSAISLDG-EKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRRLVVL 64 K+ + S SL G E + + G+ +L+ NVAS +TT+ +TQ+NEL ++P LV++ Sbjct: 346697 KTVHQFSFRSLTGGEYIRLADYAGKVILLVNVASHCNSTTKAYTQMNELAEKYPD-LVII 346873 Query: 65 GFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLP 124 G PCNQFGHQEN EEI SLK++RPG G++P F L +K EVNG N H VF +LK LP Sbjct: 346874 GCPCNQFGHQENLNGEEIYTSLKHIRPGKGFEPKFKLTEKMEVNGANAHAVFNFLKLSLP 347053 Query: 125 YPYD--------DPFSLMTDPKLIIWSPVRRSDVAWNFEK-------------------- 156 YP D P + + P +IW PV R+D++WNFEK Sbjct: 347054 YPADRTLMDEMSSPSGVFSHPMRLIWMPVSRADLSWNFEKVCILVFFIGHHVFGVRRR*F 347233 Query: 157 ------FLIGPEGEPFRRYSRTFPTINIEPDIKRLLKV 188 FLIGP+G PF+R+S +I DI+ L+K+ Sbjct: 347234 LLCMLQFLIGPDGVPFKRFSPKLDFKSISDDIELLMKM 347347 >gb|GL376564.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581313, whole genome shotgun sequence Length = 1115623 Score = 113 bits (283), Expect = 9e-26 Identities = 63/182 (34%), Positives = 98/182 (53%), Gaps = 1/182 (0%) Frame = -1 Query: 6 KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRF-PRRLVVL 64 KS Y+L + G ++ F+ ++G+ +L+ NV+S G T ++ +L L ++ + LV+L Sbjct: 420037 KSIYELKDTDISGTEITFDKYKGKVLLVVNVSSNCGLTPTNYPELTALDEKYRDQGLVIL 419858 Query: 65 GFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLP 124 FPCNQFG QE NEEI+ +K Y + +K +VNG + PVFAYLK KLP Sbjct: 419857 AFPCNQFGSQEPGTNEEIVEFVKQ------YNAQYQFFEKADVNGPHARPVFAYLKAKLP 419696 Query: 125 YPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKR 184 + + + WNF KFL+ G+PF+R++ T ++ E DI+ Sbjct: 419695 GTFGNY-------------------IKWNFTKFLVDRNGQPFKRFAPTDKPLSFEHDIQE 419573 Query: 185 LL 186 LL Sbjct: 419572 LL 419567 Score = 108 bits (271), Expect = 2e-24 Identities = 61/185 (32%), Positives = 97/185 (52%), Gaps = 1/185 (0%) Frame = -2 Query: 6 KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRF-PRRLVVL 64 KS Y+L + G ++ F+ ++G+ +L+ NV+S G T ++ +L L ++ + LV+L Sbjct: 433953 KSIYELKDTDISGTEITFDKYKGKVLLVVNVSSNCGLTPTNYPELTALDEKYRDQGLVIL 433774 Query: 65 GFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLP 124 FPCNQFG QE NEEI+ +K Y + +K +VNG + PVFAYLK KLP Sbjct: 433773 AFPCNQFGSQEPGTNEEIVEFVKQ------YNAQYQFFEKADVNGPHARPVFAYLKAKLP 433612 Query: 125 YPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKR 184 + + + WNF KFL+ G P++R++ + E +I+R Sbjct: 433611 GTFG-------------------NYIKWNFTKFLVDRNGVPYKRFAPLEKPFSFEDEIQR 433489 Query: 185 LLKVA 189 LL + Sbjct: 433488 LLSTS 433474 Score = 105 bits (263), Expect = 2e-23 Identities = 62/183 (33%), Positives = 95/183 (51%), Gaps = 1/183 (0%) Frame = +3 Query: 6 KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRF-PRRLVVL 64 KS Y+L + G +V ++G+ +L+ NV+SL G T ++ +L EL ++ + L +L Sbjct: 442557 KSIYELKDYDMQGNEVSMEKYKGKVLLVVNVSSLCGLTPTNYPELAELDKKYRDQGLEIL 442736 Query: 65 GFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLP 124 FPCNQF +QE +EEI+ +K Y F +K +VNG + PVF YLK KLP Sbjct: 442737 AFPCNQFSNQEPGTHEEIMEFVKK------YNCEFPFFEKHDVNGASARPVFTYLKAKLP 442898 Query: 125 YPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKR 184 + + V WNF KFL+ G+P++R++ + E DIK Sbjct: 442899 GSFGN-------------------FVKWNFTKFLVDRNGQPYKRFAPKDLPFSFEDDIKA 443021 Query: 185 LLK 187 LL+ Sbjct: 443022 LLE 443030 Score = 105 bits (261), Expect = 3e-23 Identities = 62/183 (33%), Positives = 94/183 (51%), Gaps = 1/183 (0%) Frame = -3 Query: 6 KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRF-PRRLVVL 64 KS Y+L + G +V ++G+ +L+ NV+SL G T ++ +L EL ++ + L +L Sbjct: 435905 KSIYELKDYDMQGNEVSMEKYKGKVLLVVNVSSLCGLTPTNYPELAELDKKYRDQGLEIL 435726 Query: 65 GFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLP 124 FPCNQF QE +EEI+ +K Y F +K +VNG + PVF YLK KLP Sbjct: 435725 AFPCNQFASQEPGTHEEIMEFVKK------YNCEFPFFEKHDVNGASARPVFTYLKAKLP 435564 Query: 125 YPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKR 184 + + V WNF KFL+ G+P++R++ + E DIK Sbjct: 435563 GSFGN-------------------FVKWNFTKFLVDRNGQPYKRFAPKDLPFSFEDDIKA 435441 Query: 185 LLK 187 LL+ Sbjct: 435440 LLE 435432 Score = 103 bits (256), Expect = 1e-22 Identities = 65/181 (35%), Positives = 93/181 (51%), Gaps = 1/181 (0%) Frame = -3 Query: 7 SFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRF-PRRLVVLG 65 S YDL + G++V + ++G+ +L+ NV+S G T ++ L EL ++ + LVVL Sbjct: 437735 SIYDLKDYDMSGQEVPIDKYKGKVLLVVNVSSNCGLTPSNYPALVELDNKYRDQGLVVLA 437556 Query: 66 FPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPY 125 FPCNQF QE +EEI+ +K Y F +K +VNG PVF YLK KLP Sbjct: 437555 FPCNQFALQEPGTHEEIMEFVKK------YNCKFPFFEKNDVNGAKARPVFTYLKAKLPT 437394 Query: 126 PYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRL 185 + S V WNF KFLI +G+P++R+S + E DI+ L Sbjct: 437393 KFG-------------------SFVKWNFTKFLIDRKGQPYKRFSPYDLPTSFEDDIQLL 437271 Query: 186 L 186 L Sbjct: 437270 L 437268 Score = 102 bits (253), Expect = 3e-22 Identities = 63/184 (34%), Positives = 90/184 (48%), Gaps = 1/184 (0%) Frame = -1 Query: 5 AKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVV 63 A+S Y + G V F+ +RG+ +L+ NVAS +F L L ++ + + Sbjct: 427228 AQSIYQFMDRDIHGNPVSFDKYRGKVLLVVNVASGCKMAYHNFPALTVLHEKYRNQGFEI 427049 Query: 64 LGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKL 123 L FPCNQFG +E +EEIL L + + L +K +VNG + PVF +LK KL Sbjct: 427048 LAFPCNQFGGEEPRNHEEILQYLSQ------FNANYELFEKADVNGSHARPVFMFLKAKL 426887 Query: 124 PYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIK 183 P + S V WNF KFL+ G+PF+R+S T +E DI+ Sbjct: 426886 PGTFG-------------------SFVKWNFTKFLVDRNGKPFKRFSPTDSPFELEQDIQ 426764 Query: 184 RLLK 187 LLK Sbjct: 426763 ELLK 426752 Score = 101 bits (252), Expect = 4e-22 Identities = 63/183 (34%), Positives = 92/183 (50%), Gaps = 1/183 (0%) Frame = -1 Query: 5 AKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVV 63 A S Y + + G V F+ +RG+ +LI NVAS + ++ QL L ++ + V Sbjct: 429982 AHSIYQFMDLDIHGNPVSFDKYRGKVLLIVNVASGCKLASHNYPQLTHLHEKYRNQGFEV 429803 Query: 64 LGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKL 123 L FPCNQFG +E NEEI+ +YV + + L +K +VNG + PVF +LK KL Sbjct: 429802 LAFPCNQFGSEEPRNNEEIV---QYVSQ---FNANYELFEKADVNGSHARPVFTFLKAKL 429641 Query: 124 PYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIK 183 P + S V WNF KFL+ G P++R+S ++E DI+ Sbjct: 429640 PGTFG-------------------SFVKWNFTKFLVDRNGVPYKRFSPKDSPFDLEDDIQ 429518 Query: 184 RLL 186 LL Sbjct: 429517 ELL 429509 Score = 97.8 bits (242), Expect = 5e-21 Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 1/187 (0%) Frame = -2 Query: 5 AKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRF-PRRLVV 63 A+S Y +++ G V F+ +RG+ +L NVAS +++ +L+ L R+ + V Sbjct: 423720 ARSIYQFMDVNIYGNPVSFDKYRGKVLLFVNVASNSKLAPQNYPELSMLYQRYCDQGFEV 423541 Query: 64 LGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKL 123 L FPCNQF +E E+IL +K + + +K +VNG + PVF YLK KL Sbjct: 423540 LAFPCNQFRSEEPGTTEQILEYVKQ------FNANYQFFEKADVNGAHARPVFTYLKAKL 423379 Query: 124 PYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIK 183 P + + V WNF KFL+ G P++RY+ T + +E DI+ Sbjct: 423378 PGKFGNY-------------------VKWNFTKFLVDRNGMPYKRYAPTDSPLALEQDIQ 423256 Query: 184 RLLKVAI 190 LL + Sbjct: 423255 ELLNAPV 423235 Score = 70.1 bits (170), Expect = 1e-12 Identities = 56/184 (30%), Positives = 83/184 (45%), Gaps = 3/184 (1%) Frame = -1 Query: 7 SFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRF-PRRLVVLG 65 SFY L+ G++ G VL+ NVAS + +L + ++ VL Sbjct: 402322 SFYSLTDADASGKRFLMEDLVGSVVLVVNVASKDPQAPLQYPELVTIADKYHDDGFTVLA 402143 Query: 66 FPCNQFGH--QENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKL 123 FP +QFG QE + EIL+ L Y+ F ++ K +VNG + F YL L Sbjct: 402142 FPSDQFGGDGQEFDTDGEILSYLVQA-----YKVNFPIMTKRDVNGLDARDAFLYLNAHL 401978 Query: 124 PYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIK 183 P + PF+ WNF KFLI G+PF+RY + ++E DI+ Sbjct: 401977 PGSFG-PFT------------------EWNFTKFLIDRHGKPFKRYETSVLPQSLEADIR 401855 Query: 184 RLLK 187 +LL+ Sbjct: 401854 QLLE 401843 >gb|GL376617.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582020, whole genome shotgun sequence Length = 790859 Score = 62.4 bits (150), Expect = 2e-10 Identities = 46/148 (31%), Positives = 64/148 (43%), Gaps = 22/148 (14%) Frame = +1 Query: 61 LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQK---------------- 104 L +L FPCNQFG QE+ +I+ ++ Y TF + K Sbjct: 515083 LEILAFPCNQFGSQESGTQAQIMQFVE-----EHYHVTFPVFAKVIPPRCAQYAGELNLL 515247 Query: 105 ------CEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFL 158 +VNG N HP+F +LK KL S S++ WNF KFL Sbjct: 515248 TEVSP*VDVNGANAHPLFTFLKSKL-------------------SGFITSNIKWNFSKFL 515370 Query: 159 IGPEGEPFRRYSRTFPTINIEPDIKRLL 186 I +G PF+RY+ T + +E DI + L Sbjct: 515371 I-VDGVPFKRYATTTSPLAMEQDIVQAL 515451 >gb|GL376629.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582032, whole genome shotgun sequence Length = 863081 Score = 53.1 bits (126), Expect = 1e-07 Identities = 45/154 (29%), Positives = 65/154 (42%), Gaps = 15/154 (9%) Frame = -3 Query: 26 FRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILN 84 F+ +AVL+ N AS G T + QL EL RF + LVVL P N F +QE ++EI+ Sbjct: 591687 FKRKAVLVVNTASKCGYTPQ-LKQLQELHERFEAKGLVVLAVPSNDFSNQETGTDDEIVQ 591511 Query: 85 SLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSP 144 + + +F + +K V G N H F + + +S P + W Sbjct: 591510 TYTSKE----FNVSFPIAKKVHVTGDNAHAFFERIVVE--------YSRSVAPTYVSWQF 591367 Query: 145 VRR--------------SDVAWNFEKFLIGPEGE 164 R WNF+KFLI G+ Sbjct: 591366 CRWICF*SFSQLL*MVCGFFRWNFDKFLIDHRGD 591265 >gb|GL376620.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582023, whole genome shotgun sequence Length = 1683196 Score = 31.2 bits (69), Expect = 0.61 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%) Frame = +2 Query: 51 NELQCRFPRRLVVLGFPCNQFGH----QENCQNEEILNSLKYVRPGGGYQPTFTLVQK 104 N++ CR PR L +L PC + H + Q E N + PGG + + QK Sbjct: 889304 NDIDCRSPRALPILAIPCTKHPHWLHLLDPFQKERPCNRI----PGGAADSSAVVAQK 889465 Database: P.ultimum/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 42,801,618 Number of sequences in database: 82 Lambda K H 0.323 0.141 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,513,733 Number of Sequences: 82 Number of extensions: 147324 Number of successful extensions: 576 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 527 Number of HSP's gapped (non-prelim): 38 length of query: 190 length of database: 14,267,206 effective HSP length: 96 effective length of query: 94 effective length of database: 14,259,334 effective search space: 1340377396 effective search space used: 1340377396 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 59 (27.3 bits)