TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000005_1.0 # Protein # Glutathione peroxidase 2 (GPx2) #
Homo sapiens # Complete
         (190 letters)

Database: P.tricornutum/genome.fa 
           31 sequences; 23,733,684 total letters

Searching...............................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000613.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    80   5e-16
gb|CM000620.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    78   3e-15
gb|CM000605.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    27   5.1  
gb|CM000608.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    27   8.7  

>gb|CM000613.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 10, whole genome
             shotgun sequence
          Length = 976485

 Score = 80.5 bits (197), Expect = 5e-16
 Identities = 56/162 (34%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
 Frame = +2

Query: 6     KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRRLV-VL 64
             +SF+DLSA  +DG  + F +FRG+  ++ NVAS  G T   +  L EL      + V +L
Sbjct: 34934 ESFFDLSAKDIDGNAIAFESFRGKVTVLTNVASYCGYTESHYRGLVELWSVMSDKAVEIL 35113

Query: 65    GFPCNQFGHQENCQNEEILN--SLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDK 122
              FPCNQFG QE  + ++I +  S K VR        F +++K  VNG N H V+ YLK +
Sbjct: 35114 AFPCNQFGAQEPEEADKIKDFASSKGVR--------FRIMEKINVNGPNAHQVYKYLKAQ 35269

Query: 123   LPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNF-EKFLIGPEG 163
                P                       + WNF   F++GP+G
Sbjct: 35270 AGPP----------------------TINWNFGTYFVVGPDG 35329



 Score = 26.9 bits (58), Expect = 6.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 51     NELQCRFPRRLVVLGFPCNQ 70
              +E+  R PRR+++ GFPC +
Sbjct: 829160 DEVTSRTPRRVILWGFPCGE 829101


>gb|CM000620.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 18, whole genome shotgun
              sequence
          Length = 702471

 Score = 77.8 bits (190), Expect = 3e-15
 Identities = 49/120 (40%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
 Frame = +2

Query: 7      SFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRF-PRRLVVLG 65
              SFY  +  S+DGE V  ++F G   L+ NVAS  G T  ++TQL +L   +  R L +L 
Sbjct: 446483 SFYSCADKSMDGEAVPMSSFEGNVCLVVNVASK*GLTKMNYTQLPQLVDEYGSRGLKILA 446662

Query: 66     FPCNQFGHQENCQNEEILNSL-KYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLP 124
              FPCNQFG QE    EEIL  + KY +            +K +VNG N   V++YLK   P
Sbjct: 446663 FPCNQFGGQEPGSPEEILAFVAKYDKE---MAKKLVFFEKADVNGANTREVYSYLKKTCP 446833


>gb|CM000605.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 1, whole genome shotgun
               sequence
          Length = 2535400

 Score = 27.3 bits (59), Expect = 5.1
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = -1

Query: 43      TTRDFTQLNELQCRFPRRLVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLV 102
               TT+DF   +E  C     +V     C   G    C +   +     +R     +PTFTLV
Sbjct: 1582849 TTKDFLGTDECSC-----IVSRSDACLIMGVMRTCASVARVQHCSILRESDSQEPTFTLV 1582685


>gb|CM000608.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 5, whole genome shotgun
              sequence
          Length = 1098047

 Score = 26.6 bits (57), Expect = 8.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 10     DLSAISLDGEKVDFNTFRGRAVLIENVASL 39
              DL  +SLD EK+D +  R RAV   ++  L
Sbjct: 776989 DLPILSLDNEKMDLSQIRMRAVAKPHIVYL 776900


  Database: P.tricornutum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 23,733,684
  Number of sequences in database:  31
  
Lambda     K      H
   0.323    0.141    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,776,354
Number of Sequences: 31
Number of extensions: 99135
Number of successful extensions: 355
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 335
Number of HSP's gapped (non-prelim): 63
length of query: 190
length of database: 7,911,228
effective HSP length: 92
effective length of query: 98
effective length of database: 7,908,376
effective search space: 775020848
effective search space used: 775020848
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)