TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000005_1.0 # Protein # Glutathione peroxidase 2 (GPx2) # Homo sapiens # Complete (190 letters) Database: P.pallidum/genome.fa 42 sequences; 32,942,533 total letters Searching..........................................done Score E Sequences producing significant alignments: (bits) Value gb|GL290996.1| Polysphondylium pallidum PN500 unplaced genomic s... 83 1e-21 gb|GL291012.1| Polysphondylium pallidum PN500 unplaced genomic s... 28 4.0 gb|GL290995.1| Polysphondylium pallidum PN500 unplaced genomic s... 27 6.8 gb|GL290985.1| Polysphondylium pallidum PN500 unplaced genomic s... 27 8.9 gb|GL290984.1| Polysphondylium pallidum PN500 unplaced genomic s... 27 8.9 >gb|GL290996.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold14, whole genome shotgun sequence Length = 1054919 Score = 82.8 bits (203), Expect(2) = 1e-21 Identities = 55/157 (35%), Positives = 77/157 (49%), Gaps = 32/157 (20%) Frame = +2 Query: 62 VVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCE--------------- 106 V+LGFPC QF +Q +EIL +LKY+RPG G+QP F + K Sbjct: 66113 VILGFPCAQFMNQSPGSGDEILLTLKYIRPGNGFQPAFPMFAKVNNNNSL*N**NLILMH 66292 Query: 107 -------------VNGQNE--HPVFAYLKDKLPYPYDDPFS-LMTDPKLIIWSPVRRSDV 150 VNG +PVF +LK P + + + LI W+PV +D+ Sbjct: 66293 FQPNFLYDPLQSNVNGDPSTVNPVFNWLKSGC-----GPITQTILETSLISWTPVMTNDI 66457 Query: 151 AWNFEKFLIGPEGEPFRRYS-RTFPTINIEPDIKRLL 186 WNFEKFL+ G+ ++RYS +T P + E DI L+ Sbjct: 66458 TWNFEKFLVSKTGQLYKRYSPQTLPELLAE-DIYNLI 66565 Score = 51.6 bits (122), Expect = 3e-07 Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Frame = +2 Query: 136 DPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYS-RTFPTINIEPDIKRLLK 187 D LI W+PV +D+ WNFEKFL+ G+ RRYS TFP + E DI L++ Sbjct: 68462 DTSLISWTPVLTNDITWNFEKFLVSKTGQLVRRYSPETFPQLLAE-DIHELIE 68617 Score = 49.3 bits (116), Expect = 2e-06 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Frame = +1 Query: 35 NVASLUGTTTRDFTQLNELQCRF-PRRLVVLGFPCNQFGHQENCQNEEILNSLKYVRPGG 93 ++ +L F NEL ++ +LGFPC+QF +Q ++E L +LKYVRPG Sbjct: 68080 SILTLKSKFINTFIGCNELVEKYGTEEFAILGFPCSQFMNQAPGSDQEFLLTLKYVRPGD 68259 Query: 94 GYQPTFTLVQK 104 + P F L K Sbjct: 68260 NFVPNFLLFTK 68292 Score = 39.3 bits (90), Expect = 0.002 Identities = 19/42 (45%), Positives = 26/42 (61%) Frame = +2 Query: 7 SFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFT 48 SFYDLS ++G + F+ FRG+ VL+ N A+ G T FT Sbjct: 67919 SFYDLSYQLINGTTITFDQFRGKVVLLLNTATF*GMTYMSFT 68044 Score = 37.4 bits (85), Expect(2) = 1e-21 Identities = 17/42 (40%), Positives = 26/42 (61%) Frame = +1 Query: 7 SFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFT 48 SFY LS ++G ++F+ F+G+ V++ N AS G T FT Sbjct: 65872 SFYSLSYQLINGTTINFDQFKGKVVMLLNTASF*GMTLETFT 65997 >gb|GL291012.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig15, whole genome shotgun sequence Length = 727357 Score = 28.1 bits (61), Expect = 4.0 Identities = 13/43 (30%), Positives = 21/43 (48%) Frame = -1 Query: 31 VLIENVASLUGTTTRDFTQLNELQCRFPRRLVVLGFPCNQFGH 73 ++ + V + GTT QLN+ +C R L ++ C GH Sbjct: 329881 IVAKEVKLIVGTTISTGKQLNDKRCIATRILSIIAVECECIGH 329753 >gb|GL290995.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold13, whole genome shotgun sequence Length = 1052162 Score = 27.3 bits (59), Expect = 6.8 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +3 Query: 112 EHPVFAYLKDKLPYPYDDPFSLMTDPKLII 141 E VF+ ++P PYDD L D KL++ Sbjct: 810891 ESKVFSVQVVEIPIPYDDEVGLNVDVKLLV 810980 >gb|GL290985.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold3, whole genome shotgun sequence Length = 2290287 Score = 26.9 bits (58), Expect = 8.9 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +1 Query: 107 VNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPK 138 +NG E+ F + K+K+ YPY P DPK Sbjct: 2038435 INGNYEYLEFLH-KNKIEYPYRPPDCYCDDPK 2038527 >gb|GL290984.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold2, whole genome shotgun sequence Length = 3242543 Score = 26.9 bits (58), Expect = 8.9 Identities = 17/61 (27%), Positives = 29/61 (47%) Frame = -1 Query: 48 TQLNELQCRFPRRLVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEV 107 TQLNELQ ++P V F + F +++ +E+++ R Y +Q+ V Sbjct: 146930 TQLNELQLKYPTNFTVNFFQDHNFMIEDSGFRDELIDQKTMERYQRLYDVLIDALQRGIV 146751 Query: 108 N 108 N Sbjct: 146750 N 146748 Database: P.pallidum/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 32,942,533 Number of sequences in database: 42 Lambda K H 0.323 0.141 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,544,873 Number of Sequences: 42 Number of extensions: 92544 Number of successful extensions: 285 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 265 Number of HSP's gapped (non-prelim): 42 length of query: 190 length of database: 10,980,844 effective HSP length: 95 effective length of query: 95 effective length of database: 10,976,854 effective search space: 1042801130 effective search space used: 1042801130 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 58 (26.9 bits)