TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000005_1.0 # Protein # Glutathione peroxidase 2 (GPx2) # Homo sapiens # Complete (190 letters) Database: N.gruberi/genome.fa 784 sequences; 40,964,085 total letters Searching....................................................done Score E Sequences producing significant alignments: (bits) Value gb|GG738879.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 91 5e-19 gb|GG738848.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 91 5e-19 gb|GG738888.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 67 1e-15 gb|GG738908.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 69 3e-12 gb|GG738855.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 60 9e-10 gb|GG738853.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 44 7e-07 gb|GG738847.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 30 1.3 gb|GG738851.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 27 8.4 >gb|GG738879.1| Naegleria gruberi genomic scaffold NAEGRscaffold_35, whole genome shotgun sequence Length = 384281 Score = 91.3 bits (225), Expect = 5e-19 Identities = 63/181 (34%), Positives = 88/181 (48%), Gaps = 1/181 (0%) Frame = +2 Query: 6 KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVL 64 KS YD S +++DGE+V + G+ +LI N AS G T + L L RF R VL Sbjct: 140762 KSLYDFSVLNVDGEEVSMKNYSGKVLLIVNTASYCGFTPQ-LGSLQRLYERFKSRGFEVL 140938 Query: 65 GFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLP 124 FPCNQFG QE +E+ + Y +FT+ K +VNG++ P+F +LK + Sbjct: 140939 AFPCNQFGAQEPGNKQEVCSF-----AAEKYNVSFTIFDKVKVNGKDAVPLFKFLKSQSK 141103 Query: 125 YPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKR 184 +T SDV WNF KFL+ G+ RYS +I P I++ Sbjct: 141104 -------GFLT------------SDVKWNFTKFLVDRSGKVVGRYSPITDPESIAPIIEK 141226 Query: 185 L 185 L Sbjct: 141227 L 141229 >gb|GG738848.1| Naegleria gruberi genomic scaffold NAEGRscaffold_4, whole genome shotgun sequence Length = 712659 Score = 91.3 bits (225), Expect = 5e-19 Identities = 61/180 (33%), Positives = 88/180 (48%), Gaps = 1/180 (0%) Frame = -3 Query: 9 YDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVLGFP 67 Y S D +V + ++G+ +LI NVAS G T + + L E+ ++ + VL FP Sbjct: 531025 YSFSVKDADLNEVSLSEYKGKVLLIVNVASKCGFT-KQYDDLQEVYNKYKEQGFEVLAFP 530849 Query: 68 CNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPY 127 CNQFG QE NEEI + ++ TF + K EVNG P++AYLK Sbjct: 530848 CNQFGSQEPGTNEEICTFAR-----SKFKTTFKIFDKVEVNGSGTIPLYAYLKK------ 530702 Query: 128 DDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLK 187 + + D V WNF KFL+ G+ +RYS T ++E DI++LLK Sbjct: 530701 -EGSGFLVDA------------VKWNFTKFLVSKSGKVLKRYSPTTNPKDLEDDIQKLLK 530561 Score = 50.1 bits (118), Expect = 1e-06 Identities = 58/212 (27%), Positives = 96/212 (45%), Gaps = 28/212 (13%) Frame = +2 Query: 4 IAKSFYDLSAISLDGEKVDFNTFRGRAVLIENV---------ASLUGTTTRDFTQLNELQ 54 +A SFY+L A + G+ +F +F G+ LI NV T +F QL EL+ Sbjct: 102899 LANSFYELKAQDIKGKVTEFKSFEGKVCLIVNVDEDELIRMKVKHQITHPEEFKQLMELR 103078 Query: 55 ---CRFPRR-LVVLGFPCNQ--FGHQ----ENCQNEEILNSLKYVRPGGGYQPTFTLVQK 104 +F + ++ FP + H+ E ++ +L++ K G + FT+++ Sbjct: 103079 ELIHKFENKEFSIIAFPTREAEVTHEHVAPEYTLDDVLLDNDKKASKIIG-KDVFTVMRP 103255 Query: 105 CEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSP--VRRSDVAWN--FEKFLIG 160 +N EH V+AYLK + K I+ P ++ D++ N F KFLI Sbjct: 103256 VHLNTMKEHQVYAYLK----------YQAEELEKKIVKHPEELKGEDISINEMFTKFLIN 103405 Query: 161 PEGEPFRRYSRTFPTINIEPD-----IKRLLK 187 +GE R+ + N+EP I++LLK Sbjct: 103406 RKGEVVARFGK-----NVEPQQLAFLIEQLLK 103486 Score = 29.6 bits (65), Expect = 1.7 Identities = 14/48 (29%), Positives = 25/48 (52%) Frame = -1 Query: 143 SPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLKVAI 190 SP+ +++F K + G PF ++R F ++ PDI LL + + Sbjct: 387162 SPLTSKVASYSFSKL*L*ISGTPFNIFTRYFSLASVSPDITILLPLQV 387019 >gb|GG738888.1| Naegleria gruberi genomic scaffold NAEGRscaffold_44, whole genome shotgun sequence Length = 351708 Score = 67.0 bits (162), Expect(2) = 1e-15 Identities = 44/140 (31%), Positives = 70/140 (50%), Gaps = 2/140 (1%) Frame = -2 Query: 50 LNELQCRFPR--RLVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEV 107 L EL ++ + + V+ FP N F +QE EEI K ++ TF +++K EV Sbjct: 156239 LQELYDKYGKDGKFEVIAFPSNSF-NQEKGSTEEICAFTK-----DRFKVTFKIMEKIEV 156078 Query: 108 NGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFR 167 NG N HP++ +LK + P + + +++ WNF KFLI EG+ Sbjct: 156077 NGDNAHPIYQFLKQEGPGGF-----------------LGSTNIKWNFTKFLINKEGKVIG 155949 Query: 168 RYSRTFPTINIEPDIKRLLK 187 RY+ T ++I DI++ LK Sbjct: 155948 RYAPTTDPLSIAKDIEKALK 155889 Score = 33.1 bits (74), Expect(2) = 1e-15 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%) Frame = -1 Query: 5 AKSFYDLSAIS-LDGEKVDFNTFRGRAVLIENVASLUGTT 43 + FYDLSA S GE + + RG+ LI NVAS G T Sbjct: 156450 SSKFYDLSATSGQTGETISMSEMRGKVCLIVNVASNCGFT 156331 >gb|GG738908.1| Naegleria gruberi genomic scaffold NAEGRscaffold_64, whole genome shotgun sequence Length = 259034 Score = 68.9 bits (167), Expect = 3e-12 Identities = 57/208 (27%), Positives = 86/208 (41%), Gaps = 29/208 (13%) Frame = +2 Query: 8 FYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVLGF 66 FY G V + ++G+ V++ NVAS G T + + L +L ++ + L +L F Sbjct: 225356 FYSFVVPDAQGNDVKLSDYKGKVVMVVNVASSCGKTPQ-YAGLQKLYEKYKDQGLEILAF 225532 Query: 67 PCNQFGHQENCQ----------------------------NEEILNSLKYVRPGGGYQPT 98 PCNQF Q +C NEEI + Y+ T Sbjct: 225533 PCNQFAFQVSCHPDHQFNYFNDNYYSDQFNIIIN**ERGSNEEICTFTR-----DKYKVT 225697 Query: 99 FTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFL 158 F + K VNG + P++ YLK + SL + + WNF KFL Sbjct: 225698 FKMFAKTTVNGGDTIPLYQYLKK------EGEGSLF-------------NAIKWNFTKFL 225820 Query: 159 IGPEGEPFRRYSRTFPTINIEPDIKRLL 186 + G+ +RYS ++E DIK+LL Sbjct: 225821 VSKSGKVLQRYSPNTEPEDMEEDIKKLL 225904 >gb|GG738855.1| Naegleria gruberi genomic scaffold NAEGRscaffold_11, whole genome shotgun sequence Length = 613270 Score = 60.5 bits (145), Expect = 9e-10 Identities = 52/208 (25%), Positives = 82/208 (39%), Gaps = 29/208 (13%) Frame = -2 Query: 8 FYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVLGF 66 FY + G +V + ++G+ V++ NVAS G T + + L L ++ + ++ F Sbjct: 514605 FYSFTVPDAQGNEVSLSDYKGKVVMVVNVASSCGLTPQ-YEGLQALYDKYKDQGFEIIAF 514429 Query: 67 PCNQFGHQE----NCQNEEILNSLKYVRPGG------------------------GYQPT 98 PCNQF Q N E + N+ Y ++ + Sbjct: 514428 PCNQFAFQVSF**NLNFE*VSNNFYYFYSTN*INLLIYSV*ERGSNDEICAFARNKFKVS 514249 Query: 99 FTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFL 158 F + K VNG P++ YLK + + KL + WNF KFL Sbjct: 514248 FKIFAKTHVNGSETIPLYKYLKKE------------GEGKLF-------KAIKWNFTKFL 514126 Query: 159 IGPEGEPFRRYSRTFPTINIEPDIKRLL 186 + G+ +RYS IE DI +LL Sbjct: 514125 VSKTGKVLKRYSPNTEPSEIEQDIVKLL 514042 >gb|GG738853.1| Naegleria gruberi genomic scaffold NAEGRscaffold_9, whole genome shotgun sequence Length = 695587 Score = 43.5 bits (101), Expect(2) = 7e-07 Identities = 32/115 (27%), Positives = 50/115 (43%) Frame = +1 Query: 73 HQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFS 132 +QE NEEI + ++ TF + K VNG P++ +LK + Sbjct: 556426 NQEPGTNEEICTFARTK-----FKVTFKIFDKINVNGSETIPLYNFLKK-------EGAG 556569 Query: 133 LMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLK 187 + D V WNF KFL+ G+ +RY+ ++E DI++LLK Sbjct: 556570 FLVDA------------VKWNFTKFLVSKSGKVLKRYAPNTSPKDMEDDIQKLLK 556698 Score = 26.6 bits (57), Expect(2) = 7e-07 Identities = 10/12 (83%), Positives = 10/12 (83%) Frame = +2 Query: 63 VLGFPCNQFGHQ 74 VL FPCNQFG Q Sbjct: 556310 VLAFPCNQFGSQ 556345 >gb|GG738847.1| Naegleria gruberi genomic scaffold NAEGRscaffold_3, whole genome shotgun sequence Length = 941567 Score = 30.0 bits (66), Expect = 1.3 Identities = 26/128 (20%), Positives = 53/128 (41%) Frame = +3 Query: 26 FRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRRLVVLGFPCNQFGHQENCQNEEILNS 85 F+ R +++ + G D + + L C++ PC ++GH N+ ++ Sbjct: 91446 FKERYLIVFGGCDMRGNFLSDILRFDLLTCQWSEISSFGDMPCGRYGHSACIHNDYLM-- 91619 Query: 86 LKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPV 145 Y+ GGY T C E V +++P D ++ + +LII+ Sbjct: 91620 --YIY--GGYYRNKTNELSCLNLETGEWKVVECRGNQIPPGTDGQSMIIYNNQLIIFGGR 91787 Query: 146 RRSDVAWN 153 ++S ++ N Sbjct: 91788 KKSWISIN 91811 >gb|GG738851.1| Naegleria gruberi genomic scaffold NAEGRscaffold_7, whole genome shotgun sequence Length = 693645 Score = 27.3 bits (59), Expect = 8.4 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%) Frame = +2 Query: 99 FTLVQKCEVNGQNEHPVFAYLKDKLPYPY--DDPFSL 133 F L+++ + N + E +F + KL YPY DD FS+ Sbjct: 478586 FILIEE*DSNNERELLIFVMI*FKLKYPYDNDDNFSI 478696 Database: N.gruberi/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 40,964,085 Number of sequences in database: 784 Lambda K H 0.323 0.141 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,012,347 Number of Sequences: 784 Number of extensions: 138611 Number of successful extensions: 597 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 54 Number of HSP's successfully gapped in prelim test: 16 Number of HSP's that attempted gapping in prelim test: 470 Number of HSP's gapped (non-prelim): 250 length of query: 190 length of database: 13,654,695 effective HSP length: 96 effective length of query: 94 effective length of database: 13,579,431 effective search space: 1276466514 effective search space used: 1276466514 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 58 (26.9 bits)