TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000005_1.0 # Protein # Glutathione peroxidase 2 (GPx2) # Homo sapiens # Complete (190 letters) Database: H.arabidopsidis/genome.fa 5422 sequences; 67,459,135 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABWE01000527.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 150 1e-38 gb|ABWE01000143.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 117 7e-27 gb|ABWE01000133.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 67 1e-11 gb|ABWE01000016.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 29 4.5 >gb|ABWE01000527.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont57.15, whole genome shotgun sequence Length = 37660 Score = 150 bits (379), Expect(2) = 1e-38 Identities = 78/162 (48%), Positives = 102/162 (62%), Gaps = 9/162 (5%) Frame = +3 Query: 6 KSFYDLSAISLDGEKV-DFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRRLVVL 64 K+ + S SL G KV + + G+ +LI NVAS +TT + QLN+L RFP LV+L Sbjct: 33840 KTVHSFSFRSLTGSKVLRLSEYAGKPILIVNVASHCNSTTTAYVQLNDLSQRFPE-LVIL 34016 Query: 65 GFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLP 124 G PCNQFGHQEN +EI SL++VRPG G++P F L +K EVNG N H VF +L+ LP Sbjct: 34017 GCPCNQFGHQENLNGDEIYQSLRHVRPGKGFEPAFPLTEKVEVNGANAHAVFNFLRMALP 34196 Query: 125 YPYD--------DPFSLMTDPKLIIWSPVRRSDVAWNFEKFL 158 YP D P + + P ++W PV R+DV+WNFEK L Sbjct: 34197 YPCDRTLLDEMTTPSGVFSHPMRLVWMPVTRADVSWNFEKVL 34322 Score = 27.7 bits (60), Expect(2) = 1e-38 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = +2 Query: 156 KFLIGPEGEPFRRYSRTFPTINIEPDIKRLLKV 188 +FL+ +G P++RYS + DIK L KV Sbjct: 34433 QFLVSSDGTPYKRYSPKLDFTAMIEDIKFLCKV 34531 >gb|ABWE01000143.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont89.4, whole genome shotgun sequence Length = 70907 Score = 117 bits (294), Expect = 7e-27 Identities = 68/183 (37%), Positives = 99/183 (54%), Gaps = 1/183 (0%) Frame = +1 Query: 5 AKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVV 63 A SFY+L +D ++V ++G+ +L+ NV+S G T ++ +L +L ++ LVV Sbjct: 29227 ATSFYELRDFDMDKKEVSMEEYKGKVILVVNVSSKCGLTPTNYPELQQLYEKYQEEGLVV 29406 Query: 64 LGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKL 123 LGFPCNQF QE +EEI +K Y+ TF L +K +VNG N PVF YLK KL Sbjct: 29407 LGFPCNQFKSQEPGTHEEIKEFVKQ------YKVTFPLFEKHDVNGSNARPVFTYLKAKL 29568 Query: 124 PYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIK 183 P + + + WNF KFL+ G+P++RY+ T ++ E DIK Sbjct: 29569 PGTFGNY-------------------IKWNFTKFLVDRNGQPYKRYAPTDLPLSFENDIK 29691 Query: 184 RLL 186 LL Sbjct: 29692 ELL 29700 Score = 112 bits (280), Expect = 3e-25 Identities = 65/182 (35%), Positives = 97/182 (53%), Gaps = 1/182 (0%) Frame = +2 Query: 6 KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVL 64 KSFY+L + +DG +V + ++G+ VL NV+S G T +++ +L +L ++ L VL Sbjct: 22493 KSFYELKDVDMDGNEVPMSKYKGKVVLAVNVSSKCGLTPKNYPELQQLYEKYQAEGLEVL 22672 Query: 65 GFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLP 124 FPCNQF QE ++EI++ +K Y TF +K +VNG PVF+YLK KLP Sbjct: 22673 AFPCNQFAGQEPGTHKEIMDFVKQ------YNVTFPFFKKDDVNGATARPVFSYLKTKLP 22834 Query: 125 YPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKR 184 + D V WNF KFL+ G P++R++ + +E DIK Sbjct: 22835 GTFGD-------------------FVKWNFTKFLVDRNGRPYKRFAPKERPLTMEEDIKT 22957 Query: 185 LL 186 LL Sbjct: 22958 LL 22963 Score = 53.5 bits (127), Expect = 2e-07 Identities = 47/185 (25%), Positives = 78/185 (42%), Gaps = 4/185 (2%) Frame = +2 Query: 7 SFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR----LV 62 S Y L + G + + RG L+ NV + G+ + D QL+EL L Sbjct: 31649 SLYALRDLDAKGSIYNLSDLRGHVALLTNVPN--GSCSSDAKQLSELVHLSTEYEDAGLK 31822 Query: 63 VLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDK 122 V+ FP QFG E +EE++ + + + F ++ +VNG N + K + Sbjct: 31823 VVAFPSAQFGDAEFDTDEELVEHFRDL-----FGVEFLVLATRDVNGPNARDAMVFCKTR 31987 Query: 123 LPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDI 182 LP + + NF KFL+G +G+ +RY+ +++ DI Sbjct: 31988 LPGASKSAANAFLEN---------------NFVKFLVGRDGQVVKRYTPRDSPLSMVTDI 32122 Query: 183 KRLLK 187 + LLK Sbjct: 32123 QTLLK 32137 >gb|ABWE01000133.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont13.26, whole genome shotgun sequence Length = 72526 Score = 67.0 bits (162), Expect = 1e-11 Identities = 69/244 (28%), Positives = 92/244 (37%), Gaps = 63/244 (25%) Frame = -1 Query: 6 KSFYDLSAISLDGEKVDFNTFRG-RAVLIENVASLUGTTTRDFTQLN------------- 51 +SF D S L +V TF +L+ NVAS G T +++ +L Sbjct: 14389 QSFLDFSVTDLRDHEVSMRTFSAFPVILVVNVASECGYTDKNYRELQVRSFTY*QYTSTS 14210 Query: 52 ----EL---QCRFPRRL------------VVLGFPCNQFGHQENCQNEEILNSLKYVRPG 92 EL C R++ +VLGFPCNQFG QE N++I+ K Sbjct: 14209 **FIELVSNACFLARKM*ELYEKYHDEGFMVLGFPCNQFGGQEPGTNDDIMKFTKEK--- 14039 Query: 93 GGYQPTFTLVQKC------------------------------EVNGQNEHPVFAYLKDK 122 Y TF L K +VNG HP+F +LK + Sbjct: 14038 --YHVTFPLFTKVHQG*GEISKYEREKGGC*CLIIYMLRHV*VDVNGDKAHPLFQFLKKR 13865 Query: 123 LPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDI 182 L D F +D+ WNF KFLI EP +RY T + IE DI Sbjct: 13864 L-----DGFV--------------TNDIKWNFTKFLI-VNHEPVKRYGTTTSPLEIEKDI 13745 Query: 183 KRLL 186 + L Sbjct: 13744 MQAL 13733 >gb|ABWE01000016.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont1.23, whole genome shotgun sequence Length = 133068 Score = 28.9 bits (63), Expect = 4.5 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Frame = +2 Query: 67 PCNQFGHQENCQNEEI--LNSLKYVRPGGGYQPTF---TLVQKCEVNGQNEHPVFAYLKD 121 PC G + C I ++ L G Y+ F LV NG+ EHP+F L+ Sbjct: 131174 PCR*HGLAQPCTMPLIPCMDQLSTFVDSGPYRNIFGPSILVYVPTRNGK*EHPLFLGLER 131353 Query: 122 KLPYP 126 LPYP Sbjct: 131354 TLPYP 131368 Database: H.arabidopsidis/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 67,459,135 Number of sequences in database: 5422 Lambda K H 0.323 0.141 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,010,953 Number of Sequences: 5422 Number of extensions: 233989 Number of successful extensions: 760 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 305 Number of HSP's successfully gapped in prelim test: 38 Number of HSP's that attempted gapping in prelim test: 416 Number of HSP's gapped (non-prelim): 402 length of query: 190 length of database: 22,486,378 effective HSP length: 99 effective length of query: 91 effective length of database: 21,949,600 effective search space: 1997413600 effective search space used: 1997413600 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 60 (27.7 bits)