TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000005_1.0 # Protein # Glutathione peroxidase 2 (GPx2) #
Homo sapiens # Complete
         (190 letters)

Database: E.siliculosus/genome.fa 
           35 sequences; 195,934,119 total letters

Searching...................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|FN649739.1| Ectocarpus siliculosus strain Ec 32, whole genom...    33   0.86 
emb|FN649760.1| Ectocarpus siliculosus strain Ec 32, whole genom...    33   0.86 
emb|FN649728.1| Ectocarpus siliculosus strain Ec 32, whole genom...    30   4.3  
emb|FN649731.1| Ectocarpus siliculosus strain Ec 32, whole genom...    30   5.6  
emb|FN649742.1| Ectocarpus siliculosus strain Ec 32, whole genom...    30   5.6  
emb|FN649757.1| Ectocarpus siliculosus strain Ec 32, whole genom...    30   7.3  

>emb|FN649739.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG14
          Length = 3614499

 Score = 32.7 bits (73), Expect = 0.86
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 150     VAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIK 183
               +  N+EKFL+  +G+  RRY R     + E D+K
Sbjct: 2757769 ITLNYEKFLLDQDGKVVRRYPRKLEAADFEADVK 2757870


>emb|FN649760.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly,
                unassigned sequences LGUn
          Length = 58155991

 Score = 32.7 bits (73), Expect = 0.86
 Identities = 32/124 (25%), Positives = 46/124 (37%), Gaps = 2/124 (1%)
 Frame = +2

Query: 63       VLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDK 122
                +LG  CN  GH   C+             GGG   T +             P F YLK +
Sbjct: 55547957 MLGTACNLVGHPAQCRRNT---------GGGGGDKTLS------------SPFFIYLKPR 55548073

Query: 123      LPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLI--GPEGEPFRRYSRTFPTINIEP 180
                L YP     +     K+ I  P   +D+ +   + ++  GPEG    R  R+   IN   
Sbjct: 55548074 LSYP--SIMAKTIPKKMNI*PPNLETDLIFGPSQPILDFGPEGVYIHRSGRSTTAINRSS 55548247

Query: 181      DIKR 184
                 + R
Sbjct: 55548248 KLSR 55548259


>emb|FN649728.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG03
          Length = 7313625

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 41      GTTTRDFTQLNELQCRFPRR-LVVLGFPCNQFGHQ 74
               G T +++ +L  L  ++  R L +LGFP NQFG Q
Sbjct: 1716580 GLTAQNYAELAALYGKYAGRGLEILGFPSNQFGSQ 1716684


>emb|FN649731.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG06
          Length = 3939081

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 61      LVVLGFPCNQFGHQENCQNEEILNS 85
               L ++ FPCNQFG QE    +EI +S
Sbjct: 2884222 LAIVAFPCNQFGGQEPGSWQEISSS 2884148


>emb|FN649742.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG17
          Length = 5807719

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 60      RLVVLGFPCNQFGHQENCQNEEI 82
               +L ++ FPCNQFG QE    EEI
Sbjct: 2178296 QLAIVAFPCNQFGAQEPGTWEEI 2178364


>emb|FN649757.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
              assembly, chromosome LG32
          Length = 932315

 Score = 29.6 bits (65), Expect = 7.3
 Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 9/108 (8%)
 Frame = +2

Query: 67     PCNQFGHQENCQNEEILNSLKYVR--------PGGGYQPTFTLVQKCEVNGQNEHPVFAY 118
              P  Q GH  + +   I  +L  +R        P   Y+P++T       NG  E P   +
Sbjct: 251516 PVEQIGHISSTRPNSIDRALFALRIFLLCWHSPHPSYKPSYTK----RTNGCRETPT--H 251677

Query: 119    LKDKLPYPYDD-PFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEP 165
               +     P +    S  T P  ++W  +RRS + W+  +    P G P
Sbjct: 251678 RRSVAH*PVEQIGHSCSTRPHGVVWFALRRSALCWHDSQPSYKPSGTP 251821


  Database: E.siliculosus/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 195,934,119
  Number of sequences in database:  35
  
Lambda     K      H
   0.323    0.141    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,253,037
Number of Sequences: 35
Number of extensions: 827462
Number of successful extensions: 3233
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3150
Number of HSP's gapped (non-prelim): 430
length of query: 190
length of database: 65,311,373
effective HSP length: 106
effective length of query: 84
effective length of database: 65,307,663
effective search space: 5485843692
effective search space used: 5485843692
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)