TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000005_1.0 # Protein # Glutathione peroxidase 2 (GPx2) #
Homo sapiens # Complete
         (190 letters)

Database: C.parvum/genome.fa 
           8 sequences; 9,102,324 total letters

Searching........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whol...    63   3e-11
gb|CM000435.1| Cryptosporidium parvum Iowa II chromosome 7, whol...    26   4.6  
gb|CM000432.1| Cryptosporidium parvum Iowa II chromosome 4, whol...    26   4.6  
gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whol...    25   7.9  

>gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whole genome shotgun
              sequence
          Length = 1099352

 Score = 63.2 bits (152), Expect = 3e-11
 Identities = 52/187 (27%), Positives = 83/187 (44%), Gaps = 2/187 (1%)
 Frame = +1

Query: 5      AKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRF-PRRLVV 63
              +KS Y  +  +L+G      + +G+ V++ NVAS  G T   + Q+  +   F P  L +
Sbjct: 141775 SKSVYSYTLTTLEGNPFPMESLKGKVVMVTNVASKCGYTKSYYKQMVRIYSVFAPLGLEI 141954

Query: 64     LGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKL 123
              +G P  +F  QE    +EI            +   F L++ C+VNG +       LK + 
Sbjct: 141955 IGLPSREFMGQEFEDPKEIRKF------ADSHNVKFPLMEICKVNGPDALEFVQKLKRET 142116

Query: 124    PYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFR-RYSRTFPTINIEPDI 182
              P  YD+  + +             S + WNF +FLI   G+    R +RT P   + P I
Sbjct: 142117 PELYDEKSNTL-------------SAIKWNFSRFLIDKNGKVVAFRGTRTEPN-ELIPKI 142254

Query: 183    KRLLKVA 189
                LL V+
Sbjct: 142255 AELLGVS 142275



 Score = 31.2 bits (69), Expect = 0.14
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
 Frame = +3

Query: 106   EVNGQNEHPVFAYLKDKLPYP----YDDPFSLMTDPKLIIWSPVRRSD---VAWNFEKFL 158
             + N  N+  + +Y+ DK+PYP    YDD  ++  +   ++ S ++ S      W+F    
Sbjct: 56871 QANSNNQMELISYIGDKIPYPTLGHYDDGAAIKMNRVKLMTSYMQSSSDYFSEWSF---- 57038

Query: 159   IGPEGEPFRR 168
                EG+ FRR
Sbjct: 57039 --TEGDVFRR 57062


>gb|CM000435.1| Cryptosporidium parvum Iowa II chromosome 7, whole genome shotgun
             sequence
          Length = 1278458

 Score = 26.2 bits (56), Expect = 4.6
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 83    LNSLKYVRPGGGYQPTFTLVQKCEVNGQ 110
             LN LKY      Y+  F  V KC +N Q
Sbjct: 94066 LNLLKYNILSNNYEKLFYFVMKCMINNQ 93983


>gb|CM000432.1| Cryptosporidium parvum Iowa II chromosome 4, whole genome shotgun
              sequence
          Length = 1104417

 Score = 26.2 bits (56), Expect = 4.6
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -3

Query: 56     RFPRRLVVL---GFPCNQFGHQENCQNEEILNSLKY 88
              +FP+  V+L   G PCN F    NC    IL++ KY
Sbjct: 778852 KFPKLRVLLDPEGIPCNDFPIDANC----ILSAWKY 778757



 Score = 25.8 bits (55), Expect = 6.0
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 116    FAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGP 161
              F  + DKL YP+ D  SL+ +  L +   +    +   FEK +I P
Sbjct: 105932 FFVILDKL*YPFIDNVSLLNNVSLRLNVSISLLSIPIFFEKLIILP 105795


>gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whole genome shotgun sequence
          Length = 1332857

 Score = 25.4 bits (54), Expect = 7.9
 Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
 Frame = -2

Query: 26      FRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRRLVVLGFPCNQFGHQENCQNEEILNS 85
               F G       V S+ G     F +   LQC   + ++  G  C     QEN +   ++N 
Sbjct: 1042576 FSGSHTRSVTVLSVTGGALAGFVKKG-LQCMNCKTIIKEGPLCKDCSKQENMECSVLINK 1042400

Query: 86      LKYVRPGG-GYQPTFTLVQKCE 106
               L   R     Y   +T  Q+C+
Sbjct: 1042399 LHEFREKEIEYNSLWTQCQRCQ 1042334


  Database: C.parvum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,102,324
  Number of sequences in database:  8
  
Lambda     K      H
   0.323    0.141    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,899,833
Number of Sequences: 8
Number of extensions: 27766
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 98
Number of HSP's gapped (non-prelim): 41
length of query: 190
length of database: 3,034,108
effective HSP length: 86
effective length of query: 104
effective length of database: 3,033,420
effective search space: 315475680
effective search space used: 315475680
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)