TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000005_1.0 # Protein # Glutathione peroxidase 2 (GPx2) #
Homo sapiens # Complete
         (190 letters)

Database: C.owczarzaki/genome.fa 
           89 sequences; 28,043,798 total letters

Searching........................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercontig_1.15 of Capsaspora owczarzaki ATCC 30864                   27   0.036
supercontig_1.3 of Capsaspora owczarzaki ATCC 30864                    27   5.9  
supercontig_1.8 of Capsaspora owczarzaki ATCC 30864                    27   7.8  

>supercontig_1.15 of Capsaspora owczarzaki ATCC 30864
          Length = 930169

 Score = 26.6 bits (57), Expect(2) = 0.036
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 98    TFTLVQKCEVNGQNEHP 114
             TF L++K +VNGQ  HP
Sbjct: 28763 TFQLMEKTKVNGQEAHP 28713



 Score = 26.2 bits (56), Expect(2) = 0.036
 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 11/83 (13%)
 Frame = -2

Query: 115   VFAYLKDKL-PYPYDDPFSLMTDPKLIIWS---------PVRRS-DVAWNFEKFLIGPEG 163
             V+ +L+ K  P P D  FS +    L+  S         P  RS +V+ N  +FLI   G
Sbjct: 28620 VYRFLRSKTDPSPIDWNFSKVGCLVLVFCSLPWFCLKTFPT*RSRNVSRNKLQFLIDRTG 28441

Query: 164   EPFRRYSRTFPTINIEPDIKRLL 186
                +R+  +     IEP+I +LL
Sbjct: 28440 STIQRFGASVRPKEIEPEIIKLL 28372


>supercontig_1.3 of Capsaspora owczarzaki ATCC 30864
          Length = 2526540

 Score = 27.3 bits (59), Expect = 5.9
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 80      EEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYD 128
               E  LN+LK       Y   F  +Q CEV+ +N   +  + K + PY ++
Sbjct: 1812949 ERSLNNLKKGNVQKSY--VFADIQSCEVDVRNPTRLLVHFKSRTPYVFN 1813089



 Score = 26.9 bits (58), Expect = 7.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 62      VVLGFPCNQFGHQENCQNEEILNSLKY 88
               + +G+ C Q G ++ C+N    N LKY
Sbjct: 2169324 IPVGWDCTQRGFKKTCENTTNKNGLKY 2169404


>supercontig_1.8 of Capsaspora owczarzaki ATCC 30864
          Length = 1512001

 Score = 26.9 bits (58), Expect = 7.8
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +1

Query: 48     TQLNELQCRFPRRLVVLGFPCNQFGHQE 75
              TQL   + RF  R VVL F  NQ G +E
Sbjct: 210145 TQLRRSRLRFSLRQVVLSFAVNQSGGRE 210228



 Score = 26.9 bits (58), Expect = 7.8
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
 Frame = -1

Query: 56     RFPRRLVVLGFPC-----NQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQ 110
              R+PR+ +  GF C      +FG ++  Q++ ++     V+  G  Q    LVQ+  V G 
Sbjct: 560755 RWPRKQMRCGFSCLRIAQKEFGRRDRIQHQIVVQC--NVKVVGVVQQLAFLVQRAHVVGH 560582

Query: 111    NEHPVFAYLKDK 122
                  V A  KD+
Sbjct: 560581 RIGRVGALDKDR 560546


  Database: C.owczarzaki/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,043,798
  Number of sequences in database:  89
  
Lambda     K      H
   0.323    0.141    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,374,220
Number of Sequences: 89
Number of extensions: 102971
Number of successful extensions: 377
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 336
Number of HSP's gapped (non-prelim): 72
length of query: 190
length of database: 9,347,932
effective HSP length: 93
effective length of query: 97
effective length of database: 9,339,655
effective search space: 905946535
effective search space used: 905946535
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)