TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000005_1.0 # Protein # Glutathione peroxidase 2 (GPx2) #
Homo sapiens # Complete
         (190 letters)

Database: C.muris/genome.fa 
           84 sequences; 9,245,251 total letters

Searching...................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DS989726.1| Cryptosporidium muris RN66 scf_1106632373453 geno...    66   4e-12
gb|DS989728.1| Cryptosporidium muris RN66 scf_1106632373407 geno...    25   8.0  
gb|DS989727.1| Cryptosporidium muris RN66 scf_1106632353999 geno...    25   8.0  

>gb|DS989726.1| Cryptosporidium muris RN66 scf_1106632373453 genomic scaffold, whole
              genome shotgun sequence
          Length = 1324930

 Score = 66.2 bits (160), Expect = 4e-12
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 1/184 (0%)
 Frame = -3

Query: 6      KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRF-PRRLVVL 64
              KSFYD +  +L+GE    ++ +G+ V+I NVAS  G + + + Q+  +   F P    +L
Sbjct: 165521 KSFYDYTLKTLEGELYPLSSLKGKVVMITNVASKCGYSYKYYNQMVRMHSVFAPFGFEIL 165342

Query: 65     GFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLP 124
                P  +F  QE    ++I  ++        +   F +++   VNG+N   +  +LK   P
Sbjct: 165341 AIPSREFLRQEYLDPKDIRKAI------NSFNVEFPVMELSNVNGENALDLINFLKFNTP 165180

Query: 125    YPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKR 184
                YD              +      ++WNF +FL+   G+     + T     + P I  
Sbjct: 165179 ELYDR-------------NKNELKAISWNFSRFLVNKSGQVVAFRTTTTSPEELIPKIAE 165039

Query: 185    LLKV 188
              LL V
Sbjct: 165038 LLNV 165027


>gb|DS989728.1| Cryptosporidium muris RN66 scf_1106632373407 genomic scaffold, whole
             genome shotgun sequence
          Length = 965821

 Score = 25.4 bits (54), Expect = 8.0
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -2

Query: 95    YQPTFTLVQKCEVNGQNEHPVFAY--LKDKLPYPYDD 129
             Y+    L+ + E+N QN    F+Y  + +KL Y  DD
Sbjct: 94584 YKDIIILLNEMEINNQNMPIPFSYVPILEKLQYQIDD 94474


>gb|DS989727.1| Cryptosporidium muris RN66 scf_1106632353999 genomic scaffold, whole genome
               shotgun sequence
          Length = 1306717

 Score = 25.4 bits (54), Expect = 8.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 152     WNFEKFLIGPEGEPFRRYSRTFPT 175
               WN  + ++  +G PF  +  TFPT
Sbjct: 1053468 WNIHQIIVRAQGFPFLCF*TTFPT 1053397


  Database: C.muris/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,245,251
  Number of sequences in database:  84
  
Lambda     K      H
   0.323    0.141    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,859,740
Number of Sequences: 84
Number of extensions: 26533
Number of successful extensions: 87
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 79
Number of HSP's gapped (non-prelim): 34
length of query: 190
length of database: 3,081,750
effective HSP length: 86
effective length of query: 104
effective length of database: 3,074,526
effective search space: 319750704
effective search space used: 319750704
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)