TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000004_1.0 # Protein # Glutathione peroxidase 1 (GPx1) # Homo sapiens # Complete (203 letters) Database: T.trahens/genome.fa 131 sequences; 28,680,627 total letters Searching.................................................................done Score E Sequences producing significant alignments: (bits) Value gb|GL349469.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 137 4e-33 gb|GL349472.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 98 3e-21 gb|GL349473.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 77 8e-15 gb|GL349489.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 67 8e-12 gb|GL349444.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 56 1e-08 gb|GL349433.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 31 0.62 gb|GL349475.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 28 3.1 gb|GL349482.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 27 8.9 >gb|GL349469.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.37, whole genome shotgun sequence Length = 357088 Score = 137 bits (346), Expect = 4e-33 Identities = 75/172 (43%), Positives = 100/172 (58%), Gaps = 2/172 (1%) Frame = +2 Query: 27 GEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQE- 85 G L+GKV+L NVAS G T+ +Y +N L + RG V+GFPC QF +Q+ Sbjct: 86465 GNTYDFSQLKGKVVLAVNVASY*GLTIPNYNALNSLMTKYANRGFTVIGFPCAQFDNQQP 86644 Query: 86 NAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMT 145 +++IL+ LKYVRPGGGF NF L K +VNGA P++A+L A P P L Sbjct: 86645 EFTSQQILDGLKYVRPGGGFVANFPLMAKSDVNGASRSPVYAYLTGACPQP---MPILEP 86815 Query: 146 DPKLITWSPVCRNDVAWNFEKFLVGPD-GVPLRRYSRRFQTIDIEPDIEALL 196 I+W+P+ D+ WNF+K+L+ PD G P+ YS DI DIEALL Sbjct: 86816 STAYISWAPIRPTDITWNFQKYLIHPDTGRPVSVYSPDTLPSDIAADIEALL 86971 Score = 27.3 bits (59), Expect = 6.8 Identities = 10/34 (29%), Positives = 16/34 (47%) Frame = +3 Query: 130 REALPAPSDDATALMTDPKLITWSPVCRNDVAWN 163 R A + T L+ DP++ W +C V W+ Sbjct: 314427 RRTTTAAATTTTVLLADPQMPAWPLLCPKHVVWS 314528 >gb|GL349472.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.40, whole genome shotgun sequence Length = 338342 Score = 98.2 bits (243), Expect = 3e-21 Identities = 63/171 (36%), Positives = 88/171 (51%), Gaps = 3/171 (1%) Frame = -2 Query: 15 SVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVL 74 ++Y FS L EP G+LRGKV+++ NVAS G T Y + +L R +GLV++ Sbjct: 84664 TLYDFSMDTLFH-EPFDFGALRGKVVIVTNVASF*GLTESRYKGLVDLHNRFHEQGLVIV 84488 Query: 75 GFPCNQFGHQE--NAKN-EEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLRE 131 G PCNQFG+QE +A+N E++ L G +F+L K EVNGAGAHPL+ + + Sbjct: 84487 GVPCNQFGNQEPFDAENPNELIAFLDDKDWGVSAAVDFLLMTKYEVNGAGAHPLYRWAKS 84308 Query: 132 ALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRR 182 L + + WNF F+ G P+RRY RR Sbjct: 84307 QLKS-------------------TLGTSIKWNFTHFVFNAKGEPVRRYGRR 84212 Score = 51.2 bits (121), Expect = 4e-07 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 1/118 (0%) Frame = -3 Query: 15 SVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVL 74 S+Y F L G+ +L GKV+++ N+ + + Q+ + +GL+VL Sbjct: 82605 SLYQFEMTTL-DGDAYDFSALHGKVVIVTNIGTRSKLAESRFLQLQAIHELYSEQGLIVL 82429 Query: 75 GFP-CNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLRE 131 G P +F E + EI + + F L + VNG+ AHPLFA++++ Sbjct: 82428 GVPSTGEFDAAEPSSAAEIRSI------ANSYGVTFQLLQAAAVNGSDAHPLFAWIKD 82273 >gb|GL349473.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.41, whole genome shotgun sequence Length = 350512 Score = 77.0 bits (188), Expect = 8e-15 Identities = 49/122 (40%), Positives = 63/122 (51%), Gaps = 5/122 (4%) Frame = +2 Query: 80 QFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDD 139 Q G QENA++ EILN +YVRPG G+EPNF + K +V G L A L LP ++ Sbjct: 32105 QHGLQENARDVEILNMYRYVRPGNGYEPNFPITTKMDVVGPNG-GLMAELAAQLPLKPEN 32281 Query: 140 AT---ALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTID--IEPDIEA 194 + T P + V + WNF LVGPDG PL+RY + D + DIE Sbjct: 32282 PNRRYLVDTTPCGLKTKKVSSKTIEWNFGMILVGPDGTPLKRYYPSVKPTDDVVVADIED 32461 Query: 195 LL 196 L Sbjct: 32462 AL 32467 Score = 34.3 bits (77), Expect = 0.056 Identities = 21/65 (32%), Positives = 29/65 (44%) Frame = +1 Query: 16 VYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLG 75 VYA+ + +P L R +L+ N+A+L G T Q+NELQ V Sbjct: 31591 VYAYKFDMITSDKPQRLP--RDTAVLLVNIAAL*GLTAEQMPQLNELQTMFEDHPFTVWA 31764 Query: 76 FPCNQ 80 P NQ Sbjct: 31765 IPANQ 31779 >gb|GL349489.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.57, whole genome shotgun sequence Length = 255174 Score = 67.0 bits (162), Expect = 8e-12 Identities = 58/171 (33%), Positives = 77/171 (45%) Frame = +2 Query: 27 GEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQEN 86 G V L S G +L+ NVAS G T YT++ L R P+ L ++GFP N+FG QE Sbjct: 241592 GREVLLSSYAGSPVLVVNVASECGLTEYMYTRLVRLARA-APQ-LRIIGFPSNEFGGQEP 241765 Query: 87 AKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTD 146 + I + + F L +K EVNGA AHP+F +L A S Sbjct: 241766 RSSSAIRAEM-----AAAYRVTFPLADKIEVNGARAHPVFKWL----VAESGG------- 241897 Query: 147 PKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLS 197 D+AWNF FLV DG R RF+ + IEA ++ Sbjct: 241898 -----------EDIAWNFTVFLVNGDG----RLEGRFEPGEPFEAIEAAVA 242005 >gb|GL349444.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.12, whole genome shotgun sequence Length = 562821 Score = 56.2 bits (134), Expect = 1e-08 Identities = 39/119 (32%), Positives = 55/119 (46%) Frame = +1 Query: 80 QFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDD 139 QFG QE NEEIL + + F LF+K +VNG+ A PL+ +L+ + Sbjct: 515614 QFGGQEPGTNEEILEFV------ARYNVQFPLFDKIDVNGSNAAPLYRYLK------AQS 515757 Query: 140 ATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLSQ 198 +T MT K WNFE F+V DG + R+ + +E DI LL + Sbjct: 515758 STLFMTRVK-------------WNFETFVVDADGHVVSRHLPTVSPLSLEDDIVRLLDE 515895 Score = 51.2 bits (121), Expect = 4e-07 Identities = 28/66 (42%), Positives = 39/66 (59%) Frame = +2 Query: 14 QSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVV 73 +S+Y F+ + + G E +SL + + VLLI NVAS G T YTQ+ L +L R + Sbjct: 514931 ESIYDFTVKDIHG-EEISLATYKDTVLLITNVASK*GLTDARYTQLVTLHEKLRDRNFNI 515107 Query: 74 LGFPCN 79 L FPCN Sbjct: 515108 LAFPCN 515125 >gb|GL349433.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.1, whole genome shotgun sequence Length = 716227 Score = 30.8 bits (68), Expect = 0.62 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = +3 Query: 121 GAHPLFAFLREALPAPSDDATALMTDPKLITWSPVC 156 G+ PL + R + P P+D A A M DP + WS C Sbjct: 541572 GSPPLAS--RTSCPRPADSAMAAMPDPAAVRWSVWC 541673 >gb|GL349475.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.43, whole genome shotgun sequence Length = 324729 Score = 28.5 bits (62), Expect = 3.1 Identities = 23/71 (32%), Positives = 32/71 (45%) Frame = -1 Query: 33 GSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEI 92 GSL G + L E V G VRD E +R G + L C + E ++ E+ Sbjct: 35826 GSLEGGLKLAELVGDEAGVVVRD----GEPRRESGRGDKLCL---CGEAVAHEQLEDAEV 35668 Query: 93 LNSLKYVRPGG 103 ++ L VR GG Sbjct: 35667 VDGLGVVRVGG 35635 >gb|GL349482.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.50, whole genome shotgun sequence Length = 300393 Score = 26.9 bits (58), Expect = 8.9 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = +1 Query: 118 NGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSP 154 +G+ AHPLF + PS ATAL++ + +P Sbjct: 58003 DGSAAHPLFGADKRPYRRPSRPATALLSTTDFMAPAP 58113 Database: T.trahens/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 28,680,627 Number of sequences in database: 131 Lambda K H 0.321 0.139 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,522,373 Number of Sequences: 131 Number of extensions: 159600 Number of successful extensions: 636 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 586 Number of HSP's gapped (non-prelim): 77 length of query: 203 length of database: 9,560,209 effective HSP length: 94 effective length of query: 109 effective length of database: 9,547,895 effective search space: 1040720555 effective search space used: 1040720555 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (26.9 bits)