TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000004_1.0 # Protein # Glutathione peroxidase 1 (GPx1) # Homo sapiens # Complete (203 letters) Database: S.parasitica/genome.fa 1445 sequences; 53,132,636 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gb|GG743886.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 112 2e-25 gb|GG743915.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 92 3e-19 gb|GG744085.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 58 8e-09 gb|GG743884.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 33 0.29 gb|GG743904.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 28 7.0 gb|GG744616.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 28 9.2 >gb|GG743886.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.4, whole genome shotgun sequence Length = 1210272 Score = 112 bits (281), Expect = 2e-25 Identities = 66/171 (38%), Positives = 89/171 (52%) Frame = -2 Query: 27 GEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQEN 86 G+ V + + RG+V L+ NVAS G T +YTQ+ +L +L RGL +L +PCNQFG QE Sbjct: 1158806 GQRVPMATFRGRVCLVVNVASA*GLTKVNYTQLVQLDDKLRERGLQILAYPCNQFGGQEP 1158627 Query: 87 AKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTD 146 N EI+ + F F LFEK +VNG ++AFL++ LP Sbjct: 1158626 GTNAEIMAFV------AKFGVRFPLFEKADVNGEHTQEVYAFLKDRLP------------ 1158501 Query: 147 PKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLS 197 D+ WNF KFLV G P++RY D+E DIEALL+ Sbjct: 1158500 -----------GDITWNFAKFLVDRHGQPVKRYDPNVAPFDLEADIEALLA 1158381 Score = 111 bits (277), Expect = 6e-25 Identities = 66/172 (38%), Positives = 87/172 (50%) Frame = -2 Query: 27 GEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQEN 86 G V + + RG+V L+ NVAS G T +YTQ+ EL + RGL +L +PCNQFG QE Sbjct: 1162361 GHCVPMETYRGRVCLVVNVASA*GLTKLNYTQLVELDNKYRDRGLQILAYPCNQFGGQEP 1162182 Query: 87 AKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTD 146 NEEI+ + GF F FEK +VNG P++A+L+ L A Sbjct: 1162181 GTNEEIMAFV------AGFNATFPFFEKADVNGDNTQPVYAYLKSKLTGTLGSA------ 1162038 Query: 147 PKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLSQ 198 + WNF KFLV +G P +RYS + +D E DI LL Q Sbjct: 1162037 -------------IKWNFTKFLVDRNGQPFKRYSPQTAPMDFEADILQLLDQ 1161921 Score = 83.2 bits (204), Expect = 2e-16 Identities = 57/185 (30%), Positives = 87/185 (47%), Gaps = 1/185 (0%) Frame = -3 Query: 15 SVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVR-DYTQMNELQRRLGPRGLVV 73 S Y S++ G E +S+ +V L+ NVA + + +YTQ+ EL RR RGL + Sbjct: 1159939 SFYELSSKNTDGVE-ISMAKFTSRVCLVVNVAGAS*SQAQLNYTQLVELDRRYRDRGLQI 1159763 Query: 74 LGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREAL 133 L +PCNQF +QE N+EIL + F F + EK +VNG+ P+F +L+ L Sbjct: 1159762 LLYPCNQFANQEPGTNDEILAFAR------SFGVTFPVMEKADVNGSKTQPVFKYLKSKL 1159601 Query: 134 PAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIE 193 + + WN+ KFL+ +G P +R+ I + DI Sbjct: 1159600 RG-------------------TFTSTIKWNYTKFLIDRNGQPYKRFGTFTPPIKLIDDIL 1159478 Query: 194 ALLSQ 198 LL + Sbjct: 1159477 DLLDE 1159463 >gb|GG743915.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.33, whole genome shotgun sequence Length = 345601 Score = 92.4 bits (228), Expect = 3e-19 Identities = 62/182 (34%), Positives = 81/182 (44%) Frame = +1 Query: 17 YAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGF 76 +A S G VS+ + G V L+ NVAS G +YT + EL RR P GL +L F Sbjct: 140359 FADSTALSPSGSTVSMAAFAGSVCLVVNVASQ*GLATLNYTHLAELDRRFRPLGLRILAF 140538 Query: 77 PCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAP 136 PCNQF QE EI GF F +F K +VNGA P+F L+ L Sbjct: 140539 PCNQFAGQEPGSEREIREF------ANGFGATFPIFAKGDVNGAKTQPVFRSLKAHL--- 140691 Query: 137 SDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALL 196 + + WNF KFLV +G P +RYS + + DI LL Sbjct: 140692 ----------------TGTLGASIKWNFTKFLVRRNGQPFKRYSPTTPPLRLLDDILMLL 140823 Query: 197 SQ 198 ++ Sbjct: 140824 AE 140829 Score = 28.5 bits (62), Expect = 5.4 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 6/52 (11%) Frame = +3 Query: 46 ASLXGTTVRDYTQMNELQRRLGPRG------LVVLGFPCNQFGHQENAKNEE 91 A L T + QMN +RR R LVV+ +FGH+E+ +N E Sbjct: 302625 AFLPPTPSNTWAQMNATRRRTAKRTGLDSHELVVVDMAKQEFGHREDRENAE 302780 >gb|GG744085.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.203, whole genome shotgun sequence Length = 29623 Score = 57.8 bits (138), Expect = 8e-09 Identities = 44/141 (31%), Positives = 58/141 (41%), Gaps = 13/141 (9%) Frame = +1 Query: 69 RGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEK-------------C 115 +GL +LGFPCNQFG QE +IL + ++ F +F+K Sbjct: 21907 QGLEILGFPCNQFGAQEPGSMRDILALTHH------YDVTFPIFQKVRSMAWAQLGMD*V 22068 Query: 116 EVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVP 175 +VNG A P+FA+L L NDV WNF KFL+ G P Sbjct: 22069 DVNGHDADPVFAYLTSVLAGS-------------------ITNDVKWNFSKFLLA-HGQP 22188 Query: 176 LRRYSRRFQTIDIEPDIEALL 196 RY+ IE I +L Sbjct: 22189 YARYAPTTSPASIEDAIVRIL 22251 >gb|GG743884.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.2, whole genome shotgun sequence Length = 1567649 Score = 32.7 bits (73), Expect = 0.29 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Frame = -2 Query: 129 LREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGP-DGVPLR 177 L E + A D + L + WS +CR D W EK LV P +G PLR Sbjct: 13942 LEELVLAFLDGPSLLKCTLTCVRWSRLCRQDTLW--EKLLVSPNEGYPLR 13799 Score = 28.1 bits (61), Expect = 7.0 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 5/32 (15%) Frame = -1 Query: 21 ARPLAG-----GEPVSLGSLRGKVLLIENVAS 47 +RP +G G V LG LRG+VL I+N+A+ Sbjct: 1482629 SRPPSGRRERQGRRVRLGELRGRVLRIQNIAA 1482534 >gb|GG743904.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.22, whole genome shotgun sequence Length = 463319 Score = 28.1 bits (61), Expect = 7.0 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = -1 Query: 152 WSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQT 185 W P R A + +++ P P RRY RR QT Sbjct: 53780 WPPRARTTPASHRSRWMAAPRSHPHRRYRRRHQT 53679 >gb|GG744616.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.734, whole genome shotgun sequence Length = 3626 Score = 27.7 bits (60), Expect = 9.2 Identities = 14/36 (38%), Positives = 23/36 (63%) Frame = -3 Query: 167 FLVGPDGVPLRRYSRRFQTIDIEPDIEALLSQGPSC 202 FLV P G LRRY+RR I+++ ++ +L + +C Sbjct: 174 FLVLPTGAMLRRYTRR--EIEVQIELLCMLKRPGAC 73 Database: S.parasitica/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 53,132,636 Number of sequences in database: 1445 Lambda K H 0.321 0.139 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,927,077 Number of Sequences: 1445 Number of extensions: 227439 Number of successful extensions: 960 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 119 Number of HSP's successfully gapped in prelim test: 39 Number of HSP's that attempted gapping in prelim test: 682 Number of HSP's gapped (non-prelim): 507 length of query: 203 length of database: 17,710,878 effective HSP length: 99 effective length of query: 104 effective length of database: 17,567,823 effective search space: 1827053592 effective search space used: 1827053592 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 60 (27.7 bits)