TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000004_1.0 # Protein # Glutathione peroxidase 1 (GPx1) # Homo sapiens # Complete (203 letters) Database: P.ultimum/genome.fa 82 sequences; 42,801,618 total letters Searching.................................................................................done Score E Sequences producing significant alignments: (bits) Value gb|GL376611.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 173 1e-43 gb|GL376564.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 116 2e-26 gb|GL376617.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 67 9e-12 gb|GL376629.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 53 2e-07 gb|GL376558.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 27 9.9 >gb|GL376611.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582014, whole genome shotgun sequence Length = 494327 Score = 173 bits (438), Expect = 1e-43 Identities = 95/217 (43%), Positives = 123/217 (56%), Gaps = 34/217 (15%) Frame = +2 Query: 14 QSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVV 73 ++V+ FS R L GGE + L GKV+L+ NVAS +T + YTQMNEL + LV+ Sbjct: 346697 KTVHQFSFRSLTGGEYIRLADYAGKVILLVNVASHCNSTTKAYTQMNELAEKYPD--LVI 346870 Query: 74 LGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREAL 133 +G PCNQFGHQEN EEI SLK++RPG GFEP F L EK EVNGA AH +F FL+ +L Sbjct: 346871 IGCPCNQFGHQENLNGEEIYTSLKHIRPGKGFEPKFKLTEKMEVNGANAHAVFNFLKLSL 347050 Query: 134 PAPSD--------DATALMTDPKLITWSPVCRNDVAWNFEK------------------- 166 P P+D + + + P + W PV R D++WNFEK Sbjct: 347051 PYPADRTLMDEMSSPSGVFSHPMRLIWMPVSRADLSWNFEKVCILVFFIGHHVFGVRRR* 347230 Query: 167 -------FLVGPDGVPLRRYSRRFQTIDIEPDIEALL 196 FL+GPDGVP +R+S + I DIE L+ Sbjct: 347231 FLLCMLQFLIGPDGVPFKRFSPKLDFKSISDDIELLM 347341 >gb|GL376564.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581313, whole genome shotgun sequence Length = 1115623 Score = 116 bits (290), Expect = 2e-26 Identities = 70/188 (37%), Positives = 98/188 (52%) Frame = -3 Query: 14 QSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVV 73 +S+Y + G E VS+ +GKVLL+ NV+SL G T +Y ++ EL ++ +GL + Sbjct: 435905 KSIYELKDYDMQGNE-VSMEKYKGKVLLVVNVSSLCGLTPTNYPELAELDKKYRDQGLEI 435729 Query: 74 LGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREAL 133 L FPCNQF QE +EEI+ +K + F FEK +VNGA A P+F +L+ L Sbjct: 435728 LAFPCNQFASQEPGTHEEIMEFVK------KYNCEFPFFEKHDVNGASARPVFTYLKAKL 435567 Query: 134 PAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIE 193 P N V WNF KFLV +G P +R++ + E DI+ Sbjct: 435566 PGSFG-------------------NFVKWNFTKFLVDRNGQPYKRFAPKDLPFSFEDDIK 435444 Query: 194 ALLSQGPS 201 ALL Q PS Sbjct: 435443 ALLEQKPS 435420 Score = 115 bits (289), Expect = 2e-26 Identities = 69/190 (36%), Positives = 99/190 (52%) Frame = +3 Query: 14 QSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVV 73 +S+Y + G E VS+ +GKVLL+ NV+SL G T +Y ++ EL ++ +GL + Sbjct: 442557 KSIYELKDYDMQGNE-VSMEKYKGKVLLVVNVSSLCGLTPTNYPELAELDKKYRDQGLEI 442733 Query: 74 LGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREAL 133 L FPCNQF +QE +EEI+ +K + F FEK +VNGA A P+F +L+ L Sbjct: 442734 LAFPCNQFSNQEPGTHEEIMEFVK------KYNCEFPFFEKHDVNGASARPVFTYLKAKL 442895 Query: 134 PAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIE 193 P N V WNF KFLV +G P +R++ + E DI+ Sbjct: 442896 PGSFG-------------------NFVKWNFTKFLVDRNGQPYKRFAPKDLPFSFEDDIK 443018 Query: 194 ALLSQGPSCA 203 ALL Q P + Sbjct: 443019 ALLEQKPDAS 443048 Score = 115 bits (289), Expect = 2e-26 Identities = 73/183 (39%), Positives = 95/183 (51%) Frame = -1 Query: 15 SVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVL 74 S+Y F + G PVS RGKVLLI NVAS +Y Q+ L + +G VL Sbjct: 429976 SIYQFMDLDIHGN-PVSFDKYRGKVLLIVNVASGCKLASHNYPQLTHLHEKYRNQGFEVL 429800 Query: 75 GFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALP 134 FPCNQFG +E NEEI ++YV F N+ LFEK +VNG+ A P+F FL+ LP Sbjct: 429799 AFPCNQFGSEEPRNNEEI---VQYV---SQFNANYELFEKADVNGSHARPVFTFLKAKLP 429638 Query: 135 APSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEA 194 + V WNF KFLV +GVP +R+S + D+E DI+ Sbjct: 429637 G-------------------TFGSFVKWNFTKFLVDRNGVPYKRFSPKDSPFDLEDDIQE 429515 Query: 195 LLS 197 LL+ Sbjct: 429514 LLN 429506 Score = 111 bits (278), Expect = 4e-25 Identities = 64/184 (34%), Positives = 95/184 (51%) Frame = -1 Query: 14 QSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVV 73 +S+Y ++G E ++ +GKVLL+ NV+S G T +Y ++ L + +GLV+ Sbjct: 420037 KSIYELKDTDISGTE-ITFDKYKGKVLLVVNVSSNCGLTPTNYPELTALDEKYRDQGLVI 419861 Query: 74 LGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREAL 133 L FPCNQFG QE NEEI+ +K + + FEK +VNG A P+FA+L+ L Sbjct: 419860 LAFPCNQFGSQEPGTNEEIVEFVKQ------YNAQYQFFEKADVNGPHARPVFAYLKAKL 419699 Query: 134 PAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIE 193 P N + WNF KFLV +G P +R++ + + E DI+ Sbjct: 419698 PG-------------------TFGNYIKWNFTKFLVDRNGQPFKRFAPTDKPLSFEHDIQ 419576 Query: 194 ALLS 197 LLS Sbjct: 419575 ELLS 419564 Score = 111 bits (277), Expect = 5e-25 Identities = 64/184 (34%), Positives = 95/184 (51%) Frame = -2 Query: 14 QSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVV 73 +S+Y ++G E ++ +GKVLL+ NV+S G T +Y ++ L + +GLV+ Sbjct: 433953 KSIYELKDTDISGTE-ITFDKYKGKVLLVVNVSSNCGLTPTNYPELTALDEKYRDQGLVI 433777 Query: 74 LGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREAL 133 L FPCNQFG QE NEEI+ +K + + FEK +VNG A P+FA+L+ L Sbjct: 433776 LAFPCNQFGSQEPGTNEEIVEFVKQ------YNAQYQFFEKADVNGPHARPVFAYLKAKL 433615 Query: 134 PAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIE 193 P N + WNF KFLV +GVP +R++ + E +I+ Sbjct: 433614 PG-------------------TFGNYIKWNFTKFLVDRNGVPYKRFAPLEKPFSFEDEIQ 433492 Query: 194 ALLS 197 LLS Sbjct: 433491 RLLS 433480 Score = 110 bits (276), Expect = 7e-25 Identities = 72/191 (37%), Positives = 96/191 (50%), Gaps = 1/191 (0%) Frame = -1 Query: 14 QSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVV 73 QS+Y F R + G PVS RGKVLL+ NVAS ++ + L + +G + Sbjct: 427225 QSIYQFMDRDIHGN-PVSFDKYRGKVLLVVNVASGCKMAYHNFPALTVLHEKYRNQGFEI 427049 Query: 74 LGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREAL 133 L FPCNQFG +E +EEIL L F N+ LFEK +VNG+ A P+F FL+ L Sbjct: 427048 LAFPCNQFGGEEPRNHEEILQYLSQ------FNANYELFEKADVNGSHARPVFMFLKAKL 426887 Query: 134 PAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIE 193 P + V WNF KFLV +G P +R+S ++E DI+ Sbjct: 426886 PG-------------------TFGSFVKWNFTKFLVDRNGKPFKRFSPTDSPFELEQDIQ 426764 Query: 194 ALL-SQGPSCA 203 LL +QG S A Sbjct: 426763 ELLKTQGNSQA 426731 Score = 107 bits (267), Expect = 8e-24 Identities = 64/171 (37%), Positives = 87/171 (50%) Frame = -2 Query: 27 GEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQEN 86 G PVS RGKVLL NVAS ++Y +++ L +R +G VL FPCNQF +E Sbjct: 423681 GNPVSFDKYRGKVLLFVNVASNSKLAPQNYPELSMLYQRYCDQGFEVLAFPCNQFRSEEP 423502 Query: 87 AKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTD 146 E+IL +K F N+ FEK +VNGA A P+F +L+ LP Sbjct: 423501 GTTEQILEYVKQ------FNANYQFFEKADVNGAHARPVFTYLKAKLPGKFG-------- 423364 Query: 147 PKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLS 197 N V WNF KFLV +G+P +RY+ + +E DI+ LL+ Sbjct: 423363 -----------NYVKWNFTKFLVDRNGMPYKRYAPTDSPLALEQDIQELLN 423244 Score = 101 bits (252), Expect = 4e-22 Identities = 63/172 (36%), Positives = 86/172 (50%) Frame = -3 Query: 27 GEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQEN 86 G+ V + +GKVLL+ NV+S G T +Y + EL + +GLVVL FPCNQF QE Sbjct: 437702 GQEVPIDKYKGKVLLVVNVSSNCGLTPSNYPALVELDNKYRDQGLVVLAFPCNQFALQEP 437523 Query: 87 AKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTD 146 +EEI+ +K + F FEK +VNGA A P+F +L+ LP Sbjct: 437522 GTHEEIMEFVK------KYNCKFPFFEKNDVNGAKARPVFTYLKAKLPTKFG-------- 437385 Query: 147 PKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLSQ 198 + V WNF KFL+ G P +R+S E DI+ LL+Q Sbjct: 437384 -----------SFVKWNFTKFLIDRKGQPYKRFSPYDLPTSFEDDIQLLLAQ 437262 Score = 64.7 bits (156), Expect = 6e-11 Identities = 52/174 (29%), Positives = 71/174 (40%), Gaps = 2/174 (1%) Frame = -1 Query: 25 AGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFG-- 82 A G+ + L G V+L+ NVAS Y ++ + + G VL FP +QFG Sbjct: 402295 ASGKRFLMEDLVGSVVLVVNVASKDPQAPLQYPELVTIADKYHDDGFTVLAFPSDQFGGD 402116 Query: 83 HQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATA 142 QE + EIL+ L ++ NF + K +VNG A F +L LP T Sbjct: 402115 GQEFDTDGEILSYLVQ-----AYKVNFPIMTKRDVNGLDARDAFLYLNAHLPGSFGPFT- 401954 Query: 143 LMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALL 196 WNF KFL+ G P +RY +E DI LL Sbjct: 401953 ------------------EWNFTKFLIDRHGKPFKRYETSVLPQSLEADIRQLL 401846 Score = 28.1 bits (61), Expect = 5.8 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%) Frame = -3 Query: 145 TDPKLITWSP---VCRNDVAWNFEKFLVGPDGVPLRRYSR 181 T P+ WS +CR D AW + D P+RR+SR Sbjct: 40355 TFPRRRIWSNSFRMCRKDGAWGRLSYSWTTDWTPIRRFSR 40236 >gb|GL376617.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582020, whole genome shotgun sequence Length = 790859 Score = 67.4 bits (163), Expect = 9e-12 Identities = 50/163 (30%), Positives = 71/163 (43%), Gaps = 23/163 (14%) Frame = +1 Query: 62 LQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEK------- 114 L + +GL +L FPCNQFG QE+ +I+ ++ + F +F K Sbjct: 515056 LYEKYHEQGLEILAFPCNQFGSQESGTQAQIMQFVE-----EHYHVTFPVFAKVIPPRCA 515220 Query: 115 ---------------CEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRND 159 +VNGA AHPLF FL+ L S ++ Sbjct: 515221 QYAGELNLLTEVSP*VDVNGANAHPLFTFLKSKL-------------------SGFITSN 515343 Query: 160 VAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDI-EALLSQGPS 201 + WNF KFL+ DGVP +RY+ + +E DI +AL Q PS Sbjct: 515344 IKWNFSKFLI-VDGVPFKRYATTTSPLAMEQDIVQALHQQEPS 515469 >gb|GL376629.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582032, whole genome shotgun sequence Length = 863081 Score = 52.8 bits (125), Expect = 2e-07 Identities = 44/151 (29%), Positives = 63/151 (41%), Gaps = 15/151 (9%) Frame = -3 Query: 38 KVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLK 97 K +L+ N AS G T + Q+ EL R +GLVVL P N F +QE ++EI+ + Sbjct: 591678 KAVLVVNTASKCGYTPQ-LKQLQELHERFEAKGLVVLAVPSNDFSNQETGTDDEIVQTYT 591502 Query: 98 YVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCR 157 F +F + +K V G AH F E + + A P ++W CR Sbjct: 591501 SKE----FNVSFPIAKKVHVTGDNAHAFF----ERIVVEYSRSVA----PTYVSWQ-FCR 591361 Query: 158 ---------------NDVAWNFEKFLVGPDG 173 WNF+KFL+ G Sbjct: 591360 WICF*SFSQLL*MVCGFFRWNFDKFLIDHRG 591268 >gb|GL376558.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581239, whole genome shotgun sequence Length = 719819 Score = 27.3 bits (59), Expect = 9.9 Identities = 17/47 (36%), Positives = 22/47 (46%) Frame = +3 Query: 147 PKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIE 193 P L ++P C NDV + VPL R +R QT PD+E Sbjct: 298848 PLLAQYAPTCTNDVIIRGRCTMT----VPLTRLTRLAQTRKRSPDLE 298976 Database: P.ultimum/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 42,801,618 Number of sequences in database: 82 Lambda K H 0.321 0.139 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,101,236 Number of Sequences: 82 Number of extensions: 153074 Number of successful extensions: 651 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 605 Number of HSP's gapped (non-prelim): 61 length of query: 203 length of database: 14,267,206 effective HSP length: 97 effective length of query: 106 effective length of database: 14,259,252 effective search space: 1511480712 effective search space used: 1511480712 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (27.3 bits)