TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000004_1.0 # Protein # Glutathione peroxidase 1 (GPx1) #
Homo sapiens # Complete
         (203 letters)

Database: P.tricornutum/genome.fa 
           31 sequences; 23,733,684 total letters

Searching...............................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000620.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    86   1e-17
gb|CM000613.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    74   5e-14
gb|CM000632.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    52   2e-07
gb|CM000608.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    27   7.5  

>gb|CM000620.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 18, whole genome shotgun
              sequence
          Length = 702471

 Score = 85.9 bits (211), Expect = 1e-17
 Identities = 69/201 (34%), Positives = 99/201 (49%), Gaps = 24/201 (11%)
 Frame = +2

Query: 27     GEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQEN 86
              GE V + S  G V L+ NVAS  G T  +YTQ+ +L    G RGL +L FPCNQFG QE 
Sbjct: 446516 GEAVPMSSFEGNVCLVVNVASK*GLTKMNYTQLPQLVDEYGSRGLKILAFPCNQFGGQEP 446695

Query: 87     AKNEEILNSL-KYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMT 145
                 EEIL  + KY +         + FEK +VNGA    ++++L++    P++D T   T
Sbjct: 446696 GSPEEILAFVAKYDKE---MAKKLVFFEKADVNGANTREVYSYLKKT--CPNEDGT---T 446851

Query: 146    DPKLITWSPVCRN--------------------DVAWNFE---KFLVGPDGVPLRRYSRR 182
              D   I W+   RN                    +  ++F    KFLV  +G  ++R +  
Sbjct: 446852 D---IRWNFGKRNKRKALGKLANQ*MSLVLLTVNPRFSFSKTAKFLVDHEGNAVKRSTN- 447019

Query: 183    FQTIDIEPDIEALLSQGPSCA 203
                  +++ DIEALL +  S A
Sbjct: 447020 -SPFEMKDDIEALLKKKESSA 447079


>gb|CM000613.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 10, whole genome
             shotgun sequence
          Length = 976485

 Score = 73.9 bits (180), Expect = 5e-14
 Identities = 53/164 (32%), Positives = 78/164 (47%), Gaps = 3/164 (1%)
 Frame = +2

Query: 14    QSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVV 73
             +S +  SA+ +  G  ++  S RGKV ++ NVAS  G T   Y  + EL   +  + + +
Sbjct: 34934 ESFFDLSAKDI-DGNAIAFESFRGKVTVLTNVASYCGYTESHYRGLVELWSVMSDKAVEI 35110

Query: 74    LGFPCNQFGHQENAKNEEILN--SLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLRE 131
             L FPCNQFG QE  + ++I +  S K VR        F + EK  VNG  AH ++ +L+ 
Sbjct: 35111 LAFPCNQFGAQEPEEADKIKDFASSKGVR--------FRIMEKINVNGPNAHQVYKYLKA 35266

Query: 132   ALPAPSDDATALMTDPKLITWSPVCRNDVAWNF-EKFLVGPDGV 174
                 P+                      + WNF   F+VGPDGV
Sbjct: 35267 QAGPPT----------------------INWNFGTYFVVGPDGV 35332


>gb|CM000632.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 30, whole genome shotgun
              sequence
          Length = 317207

 Score = 52.0 bits (123), Expect = 2e-07
 Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
 Frame = +1

Query: 102    GGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVA 161
              G G  P  ++ +K  + G GAHP + +L+     P+                      + 
Sbjct: 164683 GYGINPATIVTDKVNLLGTGAHPFWRWLQSTSRTPAG------------------LGRIE 164808

Query: 162    WNFEKFLV-GPDGVPLRRYSRRFQTIDIEPDIEALLSQGP 200
               NFEKFL+ G  G+P+RRY R++  ++++ D+EAL++  P
Sbjct: 164809 GNFEKFLIDGRTGLPVRRYPRKYAPLNLQDDVEALIATRP 164928



 Score = 28.5 bits (62), Expect = 2.6
 Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 6/124 (4%)
 Frame = +1

Query: 50     GTTVRDYTQMNELQRRLGPRGLVVLGFPCNQF---GHQENAKNEEILNSLKYVRPGGGFE 106
              G+ VRD      +Q R+GP GL   G+ C++     H E++      NS   ++P   + 
Sbjct: 157360 GSAVRDNEAPTFMQHRIGPSGLP--GYSCSRKKHPSHCESSVRRGDNNSTLRIKPKHSYP 157533

Query: 107    PNF---MLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWN 163
              P+       EK        +     +++A  +  +D  A   D   I  SP  ++ +A  
Sbjct: 157534 PDRERPYCKEKARHGAGFLNSRRGHVKDAGRSHPNDLAARYPDQDPIYCSPSHKSTLAKQ 157713

Query: 164    FEKF 167
                KF
Sbjct: 157714 RNKF 157725


>gb|CM000608.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 5, whole genome shotgun
              sequence
          Length = 1098047

 Score = 26.9 bits (58), Expect = 7.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 151    TWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRR 182
              T+  +C     WN   FL G +G PLRR + R
Sbjct: 744955 TFCWLCCRGRCWNASGFLCGTEGGPLRRATCR 745050


  Database: P.tricornutum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 23,733,684
  Number of sequences in database:  31
  
Lambda     K      H
   0.321    0.139    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,732,865
Number of Sequences: 31
Number of extensions: 92567
Number of successful extensions: 357
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 345
Number of HSP's gapped (non-prelim): 22
length of query: 203
length of database: 7,911,228
effective HSP length: 93
effective length of query: 110
effective length of database: 7,908,345
effective search space: 869917950
effective search space used: 869917950
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)