TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000004_1.0 # Protein # Glutathione peroxidase 1 (GPx1) #
Homo sapiens # Complete
         (203 letters)

Database: P.pallidum/genome.fa 
           42 sequences; 32,942,533 total letters

Searching..........................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL290996.1| Polysphondylium pallidum PN500 unplaced genomic s...    91   4e-21

>gb|GL290996.1| Polysphondylium pallidum PN500 unplaced genomic scaffold
             PPL_scaffold14, whole genome shotgun sequence
          Length = 1054919

 Score = 90.5 bits (223), Expect = 7e-19
 Identities = 53/151 (35%), Positives = 73/151 (48%), Gaps = 30/151 (19%)
 Frame = +2

Query: 60    NELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCE--- 116
             N+L  + G    V+LGFPC QF +Q     +EIL +LKY+RPG GF+P F +F K     
Sbjct: 66077 NDLVEKFGTTEFVILGFPCAQFMNQSPGSGDEILLTLKYIRPGNGFQPAFPMFAKVNNNN 66256

Query: 117   -------------------------VNG--AGAHPLFAFLREALPAPSDDATALMTDPKL 149
                                      VNG  +  +P+F +L+          T  + +  L
Sbjct: 66257 SL*N**NLILMHFQPNFLYDPLQSNVNGDPSTVNPVFNWLKSGC----GPITQTILETSL 66424

Query: 150   ITWSPVCRNDVAWNFEKFLVGPDGVPLRRYS 180
             I+W+PV  ND+ WNFEKFLV   G   +RYS
Sbjct: 66425 ISWTPVMTNDITWNFEKFLVSKTGQLYKRYS 66517



 Score = 64.3 bits (155), Expect(2) = 4e-21
 Identities = 29/71 (40%), Positives = 42/71 (59%)
 Frame = +1

Query: 44    NVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGG 103
             ++ +L    +  +   NEL  + G     +LGFPC+QF +Q    ++E L +LKYVRPG 
Sbjct: 68080 SILTLKSKFINTFIGCNELVEKYGTEEFAILGFPCSQFMNQAPGSDQEFLLTLKYVRPGD 68259

Query: 104   GFEPNFMLFEK 114
              F PNF+LF K
Sbjct: 68260 NFVPNFLLFTK 68292



 Score = 54.3 bits (129), Expect(2) = 4e-21
 Identities = 27/57 (47%), Positives = 34/57 (59%)
 Frame = +2

Query: 124   PLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYS 180
             P+F +LR    A S      + D  LI+W+PV  ND+ WNFEKFLV   G  +RRYS
Sbjct: 68408 PVFQWLRSGCGATSQT----IIDTSLISWTPVLTNDITWNFEKFLVSKTGQLVRRYS 68566


  Database: P.pallidum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 32,942,533
  Number of sequences in database:  42
  
Lambda     K      H
   0.321    0.139    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,539,486
Number of Sequences: 42
Number of extensions: 68344
Number of successful extensions: 195
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 190
Number of HSP's gapped (non-prelim): 11
length of query: 203
length of database: 10,980,844
effective HSP length: 95
effective length of query: 108
effective length of database: 10,976,854
effective search space: 1185500232
effective search space used: 1185500232
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)