TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000004_1.0 # Protein # Glutathione peroxidase 1 (GPx1) # Homo sapiens # Complete (203 letters) Database: N.gruberi/genome.fa 784 sequences; 40,964,085 total letters Searching....................................................done Score E Sequences producing significant alignments: (bits) Value gb|GG738848.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 109 1e-24 gb|GG738879.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 89 2e-18 gb|GG738908.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 79 4e-15 gb|GG738888.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 62 5e-14 gb|GG738855.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 74 7e-14 gb|GG738853.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 52 2e-10 gb|GG739029.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 28 4.2 gb|GG738922.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 28 4.2 gb|GG738847.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 28 4.2 gb|GG738911.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 27 9.4 >gb|GG738848.1| Naegleria gruberi genomic scaffold NAEGRscaffold_4, whole genome shotgun sequence Length = 712659 Score = 109 bits (273), Expect = 1e-24 Identities = 70/183 (38%), Positives = 95/183 (51%) Frame = -3 Query: 16 VYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLG 75 +Y+FS + E VSL +GKVLLI NVAS G T + Y + E+ + +G VL Sbjct: 531028 IYSFSVKDADLNE-VSLSEYKGKVLLIVNVASKCGFT-KQYDDLQEVYNKYKEQGFEVLA 530855 Query: 76 FPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPA 135 FPCNQFG QE NEEI + F+ F +F+K EVNG+G PL+A+L++ Sbjct: 530854 FPCNQFGSQEPGTNEEICTFAR-----SKFKTTFKIFDKVEVNGSGTIPLYAYLKK---- 530702 Query: 136 PSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEAL 195 + + + D V WNF KFLV G L+RYS D+E DI+ L Sbjct: 530701 ---EGSGFLVDA------------VKWNFTKFLVSKSGKVLKRYSPTTNPKDLEDDIQKL 530567 Query: 196 LSQ 198 L + Sbjct: 530566 LKE 530558 Score = 27.3 bits (59), Expect = 9.4 Identities = 13/44 (29%), Positives = 21/44 (47%) Frame = -1 Query: 153 SPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALL 196 SP+ +++F K + G P ++R F + PDI LL Sbjct: 387162 SPLTSKVASYSFSKL*L*ISGTPFNIFTRYFSLASVSPDITILL 387031 >gb|GG738879.1| Naegleria gruberi genomic scaffold NAEGRscaffold_35, whole genome shotgun sequence Length = 384281 Score = 89.4 bits (220), Expect = 2e-18 Identities = 69/185 (37%), Positives = 88/185 (47%), Gaps = 3/185 (1%) Frame = +2 Query: 14 QSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQR---RLGPRG 70 +S+Y FS + GE VS+ + GKVLLI N AS G T Q+ LQR R RG Sbjct: 140762 KSLYDFSVLNV-DGEEVSMKNYSGKVLLIVNTASYCGFT----PQLGSLQRLYERFKSRG 140926 Query: 71 LVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLR 130 VL FPCNQFG QE +E+ + + +F +F+K +VNG A PLF FL+ Sbjct: 140927 FEVLAFPCNQFGAQEPGNKQEVCSF-----AAEKYNVSFTIFDKVKVNGKDAVPLFKFLK 141091 Query: 131 EALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEP 190 + +T +DV WNF KFLV G + RYS I P Sbjct: 141092 -------SQSKGFLT------------SDVKWNFTKFLVDRSGKVVGRYSPITDPESIAP 141214 Query: 191 DIEAL 195 IE L Sbjct: 141215 IIEKL 141229 >gb|GG738908.1| Naegleria gruberi genomic scaffold NAEGRscaffold_64, whole genome shotgun sequence Length = 259034 Score = 78.6 bits (192), Expect = 4e-15 Identities = 60/204 (29%), Positives = 87/204 (42%), Gaps = 28/204 (13%) Frame = +2 Query: 23 PLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFG 82 P A G V L +GKV+++ NVAS G T + Y + +L + +GL +L FPCNQF Sbjct: 225374 PDAQGNDVKLSDYKGKVVMVVNVASSCGKTPQ-YAGLQKLYEKYKDQGLEILAFPCNQFA 225550 Query: 83 HQ----------------------------ENAKNEEILNSLKYVRPGGGFEPNFMLFEK 114 Q E NEEI + ++ F +F K Sbjct: 225551 FQVSCHPDHQFNYFNDNYYSDQFNIIIN**ERGSNEEICTFTR-----DKYKVTFKMFAK 225715 Query: 115 CEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGV 174 VNG PL+ +L++ + +L N + WNF KFLV G Sbjct: 225716 TTVNGGDTIPLYQYLKK------EGEGSLF-------------NAIKWNFTKFLVSKSGK 225838 Query: 175 PLRRYSRRFQTIDIEPDIEALLSQ 198 L+RYS + D+E DI+ LL++ Sbjct: 225839 VLQRYSPNTEPEDMEEDIKKLLAE 225910 >gb|GG738888.1| Naegleria gruberi genomic scaffold NAEGRscaffold_44, whole genome shotgun sequence Length = 351708 Score = 62.0 bits (149), Expect(2) = 5e-14 Identities = 44/139 (31%), Positives = 62/139 (44%), Gaps = 1/139 (0%) Frame = -2 Query: 59 MNELQRRLGPRG-LVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEV 117 + EL + G G V+ FP N F +QE EEI K F+ F + EK EV Sbjct: 156239 LQELYDKYGKDGKFEVIAFPSNSF-NQEKGSTEEICAFTK-----DRFKVTFKIMEKIEV 156078 Query: 118 NGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLR 177 NG AHP++ FL++ P +T ++ WNF KFL+ +G + Sbjct: 156077 NGDNAHPIYQFLKQEGPGGFLGST-----------------NIKWNFTKFLINKEGKVIG 155949 Query: 178 RYSRRFQTIDIEPDIEALL 196 RY+ + I DIE L Sbjct: 155948 RYAPTTDPLSIAKDIEKAL 155892 Score = 32.7 bits (73), Expect(2) = 5e-14 Identities = 18/36 (50%), Positives = 21/36 (58%) Frame = -1 Query: 17 YAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTT 52 Y SA GE +S+ +RGKV LI NVAS G T Sbjct: 156438 YDLSATSGQTGETISMSEMRGKVCLIVNVASNCGFT 156331 >gb|GG738855.1| Naegleria gruberi genomic scaffold NAEGRscaffold_11, whole genome shotgun sequence Length = 613270 Score = 74.3 bits (181), Expect = 7e-14 Identities = 62/210 (29%), Positives = 90/210 (42%), Gaps = 28/210 (13%) Frame = -2 Query: 17 YAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGF 76 Y+F+ P A G VSL +GKV+++ NVAS G T + Y + L + +G ++ F Sbjct: 514602 YSFTV-PDAQGNEVSLSDYKGKVVMVVNVASSCGLTPQ-YEGLQALYDKYKDQGFEIIAF 514429 Query: 77 PCNQFGHQE----NAKNEEILNSLKY------------------------VRPGGGFEPN 108 PCNQF Q N E + N+ Y F+ + Sbjct: 514428 PCNQFAFQVSF**NLNFE*VSNNFYYFYSTN*INLLIYSV*ERGSNDEICAFARNKFKVS 514249 Query: 109 FMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFL 168 F +F K VNG+ PL+ +L++ + KL + WNF KFL Sbjct: 514248 FKIFAKTHVNGSETIPLYKYLKKE------------GEGKLF-------KAIKWNFTKFL 514126 Query: 169 VGPDGVPLRRYSRRFQTIDIEPDIEALLSQ 198 V G L+RYS + +IE DI LLS+ Sbjct: 514125 VSKTGKVLKRYSPNTEPSEIEQDIVKLLSE 514036 Score = 29.3 bits (64), Expect = 2.5 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%) Frame = +1 Query: 28 EPVSLGSLRGKVLLIENV----ASLXGTTVRDYTQMNELQRRLGPRGLVVLGFP 77 E + L L +LL++N + L G T YT +NE+ R P G++V FP Sbjct: 420139 ETIPLNELTFLILLLDNSQIKKSPLIGETSILYTPLNEVFDR*YPSGVIVPSFP 420300 >gb|GG738853.1| Naegleria gruberi genomic scaffold NAEGRscaffold_9, whole genome shotgun sequence Length = 695587 Score = 52.0 bits (123), Expect(2) = 2e-10 Identities = 36/116 (31%), Positives = 52/116 (44%) Frame = +1 Query: 83 HQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATA 142 +QE NEEI + F+ F +F+K VNG+ PL+ FL++ + Sbjct: 556426 NQEPGTNEEICTFARTK-----FKVTFKIFDKINVNGSETIPLYNFLKK-------EGAG 556569 Query: 143 LMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLSQ 198 + D V WNF KFLV G L+RY+ D+E DI+ LL + Sbjct: 556570 FLVDA------------VKWNFTKFLVSKSGKVLKRYAPNTSPKDMEDDIQKLLKE 556701 Score = 30.8 bits (68), Expect(2) = 2e-10 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +2 Query: 58 QMNELQRRLGPRGLVVLGFPCNQFGHQ 84 ++ E+ + +G VL FPCNQFG Q Sbjct: 556265 EIQEVYNKYKDQGFEVLAFPCNQFGSQ 556345 >gb|GG739029.1| Naegleria gruberi genomic scaffold NAEGRscaffold_196, whole genome shotgun sequence Length = 10074 Score = 28.5 bits (62), Expect = 4.2 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 6/41 (14%) Frame = -2 Query: 66 LGPRGLVVLGFPCNQFGHQENAKNE------EILNSLKYVR 100 LGP ++++ FPCN+ ++KN E L+SL+ +R Sbjct: 1697 LGPLSVIIITFPCNKLRSFSSSKNHSRSSRCENLSSLQLLR 1575 >gb|GG738922.1| Naegleria gruberi genomic scaffold NAEGRscaffold_78, whole genome shotgun sequence Length = 209908 Score = 28.5 bits (62), Expect = 4.2 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = -1 Query: 162 WNFEKFLVGPDGVPLRRYSRRFQTIDI 188 W F KF++ G R++ R+F TID+ Sbjct: 173800 WEFRKFVIDWYGCRNRKFDRKFVTIDL 173720 >gb|GG738847.1| Naegleria gruberi genomic scaffold NAEGRscaffold_3, whole genome shotgun sequence Length = 941567 Score = 28.5 bits (62), Expect = 4.2 Identities = 16/74 (21%), Positives = 35/74 (47%) Frame = -2 Query: 76 FPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPA 135 + C + + +++ +N+ K + GF+ NF+L++ V A ++ +R L Sbjct: 332461 YECESGPYNHSEPHDDQMNNCKSIVGIRGFDENFILYDMSYVVEAFSNGRIFLMRNTLEH 332282 Query: 136 PSDDATALMTDPKL 149 + AT + P+L Sbjct: 332281 MFEKATRIYYKPEL 332240 >gb|GG738911.1| Naegleria gruberi genomic scaffold NAEGRscaffold_67, whole genome shotgun sequence Length = 261328 Score = 27.3 bits (59), Expect = 9.4 Identities = 18/52 (34%), Positives = 24/52 (46%) Frame = +2 Query: 150 ITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLSQGPS 201 +T C ND+ + +F P R S R + DI DI+ LLS PS Sbjct: 155096 VTIQDNCGNDIKIHGTRFRSKWKFPPFMRDSLRKKDFDIPKDIDILLSHFPS 155251 Database: N.gruberi/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 40,964,085 Number of sequences in database: 784 Lambda K H 0.321 0.139 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7,755,610 Number of Sequences: 784 Number of extensions: 103506 Number of successful extensions: 404 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 345 Number of HSP's gapped (non-prelim): 107 length of query: 203 length of database: 13,654,695 effective HSP length: 97 effective length of query: 106 effective length of database: 13,578,647 effective search space: 1439336582 effective search space used: 1439336582 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (27.3 bits)