TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000004_1.0 # Protein # Glutathione peroxidase 1 (GPx1) # Homo sapiens # Complete (203 letters) Database: H.arabidopsidis/genome.fa 5422 sequences; 67,459,135 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABWE01000527.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 150 6e-38 gb|ABWE01000143.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 105 3e-23 gb|ABWE01000133.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 65 8e-11 gb|ABWE01000039.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 30 3.0 >gb|ABWE01000527.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont57.15, whole genome shotgun sequence Length = 37660 Score = 150 bits (378), Expect(2) = 6e-38 Identities = 80/163 (49%), Positives = 101/163 (61%), Gaps = 8/163 (4%) Frame = +3 Query: 14 QSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVV 73 ++V++FS R L G + + L GK +LI NVAS +T Y Q+N+L +R LV+ Sbjct: 33840 KTVHSFSFRSLTGSKVLRLSEYAGKPILIVNVASHCNSTTTAYVQLNDLSQRFPE--LVI 34013 Query: 74 LGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREAL 133 LG PCNQFGHQEN +EI SL++VRPG GFEP F L EK EVNGA AH +F FLR AL Sbjct: 34014 LGCPCNQFGHQENLNGDEIYQSLRHVRPGKGFEPAFPLTEKVEVNGANAHAVFNFLRMAL 34193 Query: 134 PAPSD--------DATALMTDPKLITWSPVCRNDVAWNFEKFL 168 P P D + + + P + W PV R DV+WNFEK L Sbjct: 34194 PYPCDRTLLDEMTTPSGVFSHPMRLVWMPVTRADVSWNFEKVL 34322 Score = 25.8 bits (55), Expect(2) = 6e-38 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +2 Query: 166 KFLVGPDGVPLRRYSRRFQTIDIEPDIEAL 195 +FLV DG P +RYS + + DI+ L Sbjct: 34433 QFLVSSDGTPYKRYSPKLDFTAMIEDIKFL 34522 >gb|ABWE01000143.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont89.4, whole genome shotgun sequence Length = 70907 Score = 105 bits (263), Expect = 3e-23 Identities = 62/169 (36%), Positives = 89/169 (52%) Frame = +1 Query: 30 VSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKN 89 VS+ +GKV+L+ NV+S G T +Y ++ +L + GLVVLGFPCNQF QE + Sbjct: 29275 VSMEEYKGKVILVVNVSSKCGLTPTNYPELQQLYEKYQEEGLVVLGFPCNQFKSQEPGTH 29454 Query: 90 EEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKL 149 EEI +K ++ F LFEK +VNG+ A P+F +L+ LP Sbjct: 29455 EEIKEFVKQ------YKVTFPLFEKHDVNGSNARPVFTYLKAKLPG-------------- 29574 Query: 150 ITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLSQ 198 N + WNF KFLV +G P +RY+ + E DI+ LL++ Sbjct: 29575 -----TFGNYIKWNFTKFLVDRNGQPYKRYAPTDLPLSFENDIKELLAK 29706 Score = 102 bits (255), Expect = 3e-22 Identities = 59/172 (34%), Positives = 91/172 (52%) Frame = +2 Query: 27 GEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQEN 86 G V + +GKV+L NV+S G T ++Y ++ +L + GL VL FPCNQF QE Sbjct: 22529 GNEVPMSKYKGKVVLAVNVSSKCGLTPKNYPELQQLYEKYQAEGLEVLAFPCNQFAGQEP 22708 Query: 87 AKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTD 146 ++EI++ +K + F F+K +VNGA A P+F++L+ LP D Sbjct: 22709 GTHKEIMDFVKQ------YNVTFPFFKKDDVNGATARPVFSYLKTKLPGTFGDF------ 22852 Query: 147 PKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLSQ 198 V WNF KFLV +G P +R++ + + + +E DI+ LL+Q Sbjct: 22853 -------------VKWNFTKFLVDRNGRPYKRFAPKERPLTMEEDIKTLLAQ 22969 Score = 68.2 bits (165), Expect = 8e-12 Identities = 54/179 (30%), Positives = 78/179 (43%), Gaps = 3/179 (1%) Frame = +2 Query: 25 AGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNEL---QRRLGPRGLVVLGFPCNQF 81 A G +L LRG V L+ NV + G+ D Q++EL GL V+ FP QF Sbjct: 31676 AKGSIYNLSDLRGHVALLTNVPN--GSCSSDAKQLSELVHLSTEYEDAGLKVVAFPSAQF 31849 Query: 82 GHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDAT 141 G E +EE++ + + F F++ +VNG A F + LP S A Sbjct: 31850 GDAEFDTDEELVEHFRDL-----FGVEFLVLATRDVNGPNARDAMVFCKTRLPGASKSAA 32014 Query: 142 ALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLSQGP 200 + NF KFLVG DG ++RY+ R + + DI+ LL + P Sbjct: 32015 NAFLEN---------------NFVKFLVGRDGQVVKRYTPRDSPLSMVTDIQTLLKEPP 32146 >gb|ABWE01000133.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont13.26, whole genome shotgun sequence Length = 72526 Score = 64.7 bits (156), Expect = 8e-11 Identities = 65/236 (27%), Positives = 90/236 (38%), Gaps = 57/236 (24%) Frame = -1 Query: 14 QSVYAFSARPLAGGEPVSLGSLRG-KVLLIENVASLXGTTVRDYTQMN------------ 60 QS FS L E VS+ + V+L+ NVAS G T ++Y ++ Sbjct: 14389 QSFLDFSVTDLRDHE-VSMRTFSAFPVILVVNVASECGYTDKNYRELQVRSFTY*QYTST 14213 Query: 61 -------------------ELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLK---- 97 EL + G +VLGFPCNQFG QE N++I+ K Sbjct: 14212 S**FIELVSNACFLARKM*ELYEKYHDEGFMVLGFPCNQFGGQEPGTNDDIMKFTKEKYH 14033 Query: 98 ------------------YVRPGGGFEPNFMLFEK---CEVNGAGAHPLFAFLREALPAP 136 Y R GG + + +VNG AHPLF FL++ L Sbjct: 14032 VTFPLFTKVHQG*GEISKYEREKGGC*CLIIYMLRHV*VDVNGDKAHPLFQFLKKRLDG- 13856 Query: 137 SDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDI 192 ND+ WNF KFL+ + P++RY ++IE DI Sbjct: 13855 ------------------FVTNDIKWNFTKFLI-VNHEPVKRYGTTTSPLEIEKDI 13745 >gb|ABWE01000039.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont2.18, whole genome shotgun sequence Length = 110623 Score = 29.6 bits (65), Expect = 3.0 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +1 Query: 153 SPVCRNDVAWNFEKFLVGPDGVPLRR 178 S VC+ D NF K + GPDG P+ R Sbjct: 15268 STVCQPDCYCNFSK*IEGPDGKPITR 15345 Database: H.arabidopsidis/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 67,459,135 Number of sequences in database: 5422 Lambda K H 0.321 0.139 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,888,427 Number of Sequences: 5422 Number of extensions: 218664 Number of successful extensions: 789 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 293 Number of HSP's successfully gapped in prelim test: 41 Number of HSP's that attempted gapping in prelim test: 462 Number of HSP's gapped (non-prelim): 390 length of query: 203 length of database: 22,486,378 effective HSP length: 100 effective length of query: 103 effective length of database: 21,944,178 effective search space: 2260250334 effective search space used: 2260250334 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 61 (28.1 bits)