TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000004_1.0 # Protein # Glutathione peroxidase 1 (GPx1) #
Homo sapiens # Complete
         (203 letters)

Database: E.siliculosus/genome.fa 
           35 sequences; 195,934,119 total letters

Searching...................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|FN649728.1| Ectocarpus siliculosus strain Ec 32, whole genom...    37   0.040
emb|FN649739.1| Ectocarpus siliculosus strain Ec 32, whole genom...    36   0.089
emb|FN649731.1| Ectocarpus siliculosus strain Ec 32, whole genom...    31   2.8  
emb|FN649760.1| Ectocarpus siliculosus strain Ec 32, whole genom...    31   2.8  
emb|FN649742.1| Ectocarpus siliculosus strain Ec 32, whole genom...    31   3.7  

>emb|FN649728.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG03
          Length = 7313625

 Score = 37.4 bits (85), Expect = 0.040
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = +1

Query: 50      GTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQ 84
               G T ++Y ++  L  +   RGL +LGFP NQFG Q
Sbjct: 1716580 GLTAQNYAELAALYGKYAGRGLEILGFPSNQFGSQ 1716684



 Score = 30.8 bits (68), Expect = 3.7
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -2

Query: 50      GTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEI 92
               G T ++Y ++  L  +    GL +LGFP N+F  + + + + +
Sbjct: 1726661 GLTAQNYAELAALYGKYAGLGLEILGFPSNEFASEVHTRIQRL 1726533


>emb|FN649739.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG14
          Length = 3614499

 Score = 36.2 bits (82), Expect = 0.089
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +1

Query: 160     VAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIE 193
               +  N+EKFL+  DG  +RRY R+ +  D E D++
Sbjct: 2757769 ITLNYEKFLLDQDGKVVRRYPRKLEAADFEADVK 2757870



 Score = 31.6 bits (70), Expect = 2.2
 Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
 Frame = +2

Query: 126   FAFLREALPA----PSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSR 181
             F F+R A+P     PS     L     L T SP       W  +K LVG D  P  R+SR
Sbjct: 44402 FRFVRVAVPCLVGFPSSSPPLLQASQ*LATTSPDTYRSALW*LKK-LVGFDVPPTLRFSR 44578

Query: 182   RF 183
             +F
Sbjct: 44579 KF 44584


>emb|FN649731.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG06
          Length = 3939081

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 71      LVVLGFPCNQFGHQENAKNEEILNS 95
               L ++ FPCNQFG QE    +EI +S
Sbjct: 2884222 LAIVAFPCNQFGGQEPGSWQEISSS 2884148



 Score = 30.4 bits (67), Expect = 4.9
 Identities = 22/65 (33%), Positives = 28/65 (43%)
 Frame = -1

Query: 116     EVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVP 175
               EVNG  + PLFA+L+ A   P                      ++ WNF KFLV   G  
Sbjct: 2883480 EVNGLRSQPLFAWLKAASGVP---------------------GNIEWNFTKFLV-VGGNH 2883367

Query: 176     LRRYS 180
               + RYS
Sbjct: 2883366 VTRYS 2883352


>emb|FN649760.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly,
                unassigned sequences LGUn
          Length = 58155991

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -1

Query: 119      GAGAHPLFAFLREALPAPS--DDATALMTDPKLITWSPVCRNDVA 161
                GAG  PLFA LR ALP      + +A  + PK +  S VCR  VA
Sbjct: 33313132 GAGRSPLFAALRSALPLSDHPGNLSA*PSRPKPLLRSHVCRVRVA 33312998



 Score = 30.0 bits (66), Expect = 6.3
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = +1

Query: 58       QMNELQ---RRLGPRGLVVLGFPCNQFGHQE 85
                Q+ EL+   +R    GLVVLG P N FG QE
Sbjct: 45720613 QLKELELVHKRFRGEGLVVLGVPSNDFGAQE 45720705


>emb|FN649742.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG17
          Length = 5807719

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +2

Query: 71      LVVLGFPCNQFGHQENAKNEEI 92
               L ++ FPCNQFG QE    EEI
Sbjct: 2178299 LAIVAFPCNQFGAQEPGTWEEI 2178364



 Score = 29.6 bits (65), Expect = 8.3
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = +3

Query: 116     EVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVP 175
               +VNG  + P+FA+L+ A   P                     +D+ WNF KFLV  D   
Sbjct: 2179446 DVNGLHSSPMFAWLKAASGNP---------------------HDIPWNFTKFLVLCDST- 2179559

Query: 176     LRRYS 180
               ++R+S
Sbjct: 2179560 VKRFS 2179574


  Database: E.siliculosus/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 195,934,119
  Number of sequences in database:  35
  
Lambda     K      H
   0.321    0.139    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,966,381
Number of Sequences: 35
Number of extensions: 918007
Number of successful extensions: 3606
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3309
Number of HSP's gapped (non-prelim): 1001
length of query: 203
length of database: 65,311,373
effective HSP length: 107
effective length of query: 96
effective length of database: 65,307,628
effective search space: 6269532288
effective search space used: 6269532288
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)