TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000004_1.0 # Protein # Glutathione peroxidase 1 (GPx1) #
Homo sapiens # Complete
         (203 letters)

Database: C.parvum/genome.fa 
           8 sequences; 9,102,324 total letters

Searching........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whol...    69   5e-13
gb|CM000433.1| Cryptosporidium parvum Iowa II chromosome 5, whol...    26   6.7  
gb|CM000435.1| Cryptosporidium parvum Iowa II chromosome 7, whol...    25   8.8  

>gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whole genome shotgun
              sequence
          Length = 1099352

 Score = 69.3 bits (168), Expect = 5e-13
 Identities = 52/183 (28%), Positives = 81/183 (44%)
 Frame = +1

Query: 14     QSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVV 73
              +SVY+++   L G  P  + SL+GKV+++ NVAS  G T   Y QM  +     P GL +
Sbjct: 141778 KSVYSYTLTTLEGN-PFPMESLKGKVVMVTNVASKCGYTKSYYKQMVRIYSVFAPLGLEI 141954

Query: 74     LGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREAL 133
              +G P  +F  QE    +EI       +        F L E C+VNG  A      L+   
Sbjct: 141955 IGLPSREFMGQEFEDPKEIR------KFADSHNVKFPLMEICKVNGPDALEFVQKLKRET 142116

Query: 134    PAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIE 193
              P   D+ +  +             + + WNF +FL+  +G  +     R +  ++ P I 
Sbjct: 142117 PELYDEKSNTL-------------SAIKWNFSRFLIDKNGKVVAFRGTRTEPNELIPKIA 142257

Query: 194    ALL 196
               LL
Sbjct: 142258 ELL 142266


>gb|CM000433.1| Cryptosporidium parvum Iowa II chromosome 5, whole genome shotgun
              sequence
          Length = 1080900

 Score = 25.8 bits (55), Expect = 6.7
 Identities = 24/78 (30%), Positives = 32/78 (41%)
 Frame = -3

Query: 20     SARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCN 79
              S  P  G EP   GS  G      N A L  +    Y Q  + Q+ L     ++LG   N
Sbjct: 544162 STTPNLGNEPNIFGSCNGS----NNNAML--SQYIQYLQFIQGQQVLEANKNLILGSLLN 544001

Query: 80     QFGHQENAKNEEILNSLK 97
              Q   Q+N    +I N L+
Sbjct: 544000 QGNGQQNQIQNQIQNQLQ 543947


>gb|CM000435.1| Cryptosporidium parvum Iowa II chromosome 7, whole genome shotgun
             sequence
          Length = 1278458

 Score = 25.4 bits (54), Expect = 8.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 175   PLRRYSRRFQTIDIEPDIEALLSQGPSC 202
             P+   +  F   D  PD+E L+ Q P+C
Sbjct: 18752 PILNIAYSFLENDSSPDMELLIQQNPNC 18835


  Database: C.parvum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,102,324
  Number of sequences in database:  8
  
Lambda     K      H
   0.321    0.139    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,579,994
Number of Sequences: 8
Number of extensions: 20307
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 59
Number of HSP's gapped (non-prelim): 16
length of query: 203
length of database: 3,034,108
effective HSP length: 87
effective length of query: 116
effective length of database: 3,033,412
effective search space: 351875792
effective search space used: 351875792
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)