TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000004_1.0 # Protein # Glutathione peroxidase 1 (GPx1) #
Homo sapiens # Complete
         (203 letters)

Database: C.muris/genome.fa 
           84 sequences; 9,245,251 total letters

Searching...................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DS989726.1| Cryptosporidium muris RN66 scf_1106632373453 geno...    65   1e-11
gb|DS989728.1| Cryptosporidium muris RN66 scf_1106632373407 geno...    27   3.1  

>gb|DS989726.1| Cryptosporidium muris RN66 scf_1106632373453 genomic scaffold, whole
              genome shotgun sequence
          Length = 1324930

 Score = 64.7 bits (156), Expect = 1e-11
 Identities = 51/184 (27%), Positives = 79/184 (42%)
 Frame = -3

Query: 14     QSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVV 73
              +S Y ++ + L G E   L SL+GKV++I NVAS  G + + Y QM  +     P G  +
Sbjct: 165521 KSFYDYTLKTLEG-ELYPLSSLKGKVVMITNVASKCGYSYKYYNQMVRMHSVFAPFGFEI 165345

Query: 74     LGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREAL 133
              L  P  +F  QE    ++I  ++        F   F + E   VNG  A  L  FL+   
Sbjct: 165344 LAIPSREFLRQEYLDPKDIRKAI------NSFNVEFPVMELSNVNGENALDLINFLK--- 165192

Query: 134    PAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIE 193
                           P+L   +      ++WNF +FLV   G  +   +      ++ P I 
Sbjct: 165191 ----------FNTPELYDRNKNELKAISWNFSRFLVNKSGQVVAFRTTTTSPEELIPKIA 165042

Query: 194    ALLS 197
               LL+
Sbjct: 165041 ELLN 165030


>gb|DS989728.1| Cryptosporidium muris RN66 scf_1106632373407 genomic scaffold, whole
              genome shotgun sequence
          Length = 965821

 Score = 26.9 bits (58), Expect = 3.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 78     CNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFE 113
              CN      N  N++ + S+    P  GF+PN  +FE
Sbjct: 464614 CNNIETGSNIPNQDFMTSVFSFYPTRGFDPNGGVFE 464721


  Database: C.muris/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,245,251
  Number of sequences in database:  84
  
Lambda     K      H
   0.321    0.139    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,504,040
Number of Sequences: 84
Number of extensions: 17676
Number of successful extensions: 53
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46
Number of HSP's gapped (non-prelim): 16
length of query: 203
length of database: 3,081,750
effective HSP length: 87
effective length of query: 116
effective length of database: 3,074,442
effective search space: 356635272
effective search space used: 356635272
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)