TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000004_1.0 # Protein # Glutathione peroxidase 1 (GPx1) #
Homo sapiens # Complete
         (203 letters)

Database: C.merolae/genome.fa 
           20 sequences; 16,546,747 total letters

Searching....................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|AP006488.2| Cyanidioschyzon merolae DNA, chromosome 6, compl...    27   6.9  

>dbj|AP006488.2| Cyanidioschyzon merolae DNA, chromosome 6, complete genome, complete
              sequence
          Length = 536163

 Score = 26.6 bits (57), Expect = 6.9
 Identities = 15/56 (26%), Positives = 22/56 (39%)
 Frame = +1

Query: 114    KCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLV 169
              +C    A  H      R  L   ++  T L + P L   +  C   + W  EKFL+
Sbjct: 191275 RCTQGHASGHA*DTCRRSVLGLSAEQCTLLASGPGL---AEECLEPIGWRLEKFLI 191433


  Database: C.merolae/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 16,546,747
  Number of sequences in database:  20
  
Lambda     K      H
   0.321    0.139    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,154,776
Number of Sequences: 20
Number of extensions: 68067
Number of successful extensions: 330
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 330
Number of HSP's gapped (non-prelim): 5
length of query: 203
length of database: 5,515,582
effective HSP length: 91
effective length of query: 112
effective length of database: 5,513,762
effective search space: 617541344
effective search space used: 617541344
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)