T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame
CPU TIME:1 sec.
SCORE=87
*
BAD AVG GOOD
*
C_merolae : 89
C_owczarzaki : 88
C_owczarzaki_1 : 87
E_siliculosus : 88
H_arabidopsis : 88
N_gruberi : 86
P_pallidum : 90
P_tricornutum : 85
P_ultimum : 89
P_ultimum_1 : 88
C_elegans : 86
O_lucimarinus : 89
P_infestans : 89
H_sapiensSelR1 : 80
H_sapiensSelR2 : 84
H_sapiensSelR3 : 86
S_cerevisiae : 85
S.parasitica1 : 89
S_parasitica2 : 85
S_parasitica3 : 90
T_trahens : 87
cons : 87
C_merolae KD-------------------------------------------
C_owczarzaki ---------------------------------------------
C_owczarzaki_1 ---------------------------------------------
E_siliculosus ---------------------------------------------
H_arabidopsis ---------------------------------------------
N_gruberi ---------------------------------------------
P_pallidum ---------------------------------------------
P_tricornutum ---------------------------------------------
P_ultimum MTDNS----------------------------------------
P_ultimum_1 MAAAS----------------------------------------
C_elegans MTTKKFRM----------EDV----------------GLS-----
O_lucimarinus ---------------------------------------------
P_infestans MSSSN----------------------------------------
H_sapiensSelR1 MSF------------------------------------------
H_sapiensSelR2 MGAGAETG---RGQRAAPERAARLLWLLRGLTLGTAPRRAVR---
H_sapiensSelR3 MSPRRTLP----------RPLSLCLSLCLCLCLAAALGSAQS---
S_cerevisiae MNKWSRLYVI-TVRRTFPGRRNIVLTQ------YWNKS-------
S.parasitica1 ---------------------------------------------
S_parasitica2 KADRHAVDAVTLVRRVLEA---FVLEDV---THVAAASRADNLDA
S_parasitica3 ---------------------------------------------
T_trahens ---------------------------------------------
cons
C_merolae ---------------------------------------------
C_owczarzaki ---------------------------------------------
C_owczarzaki_1 ---------------------------------------------
E_siliculosus ---------------------------------------------
H_arabidopsis ---------------------------------------------
N_gruberi ---------------------------------------------
P_pallidum ---------------------------------------------
P_tricornutum ---------------------------------------------
P_ultimum ---------------------------------------------
P_ultimum_1 ---------------------------------------------
C_elegans ---------------------------------------------
O_lucimarinus ---------------------------------------------
P_infestans ---------------------------------------------
H_sapiensSelR1 ---------------------------------------------
H_sapiensSelR2 ----------------------------------GQAGGG-----
H_sapiensSelR3 ---------------------------------------------
S_cerevisiae ---------------------------------------------
S.parasitica1 ---------------------------------------------
S_parasitica2 VAIFVRDGRDRTGKRVEERGPAAARVELVARLVQGRVAAGAVVDA
S_parasitica3 ---------------------------------------------
T_trahens ---------------------------------------------
cons
C_merolae -------------------------------------WRALTEED
C_owczarzaki ---------------------------------------------
C_owczarzaki_1 ---------------------------------------------
E_siliculosus ---------------------------------------------
H_arabidopsis ---------------------------------------------
N_gruberi ---------------------------------------------
P_pallidum -----------------------------------------SEDE
P_tricornutum -------------------------------------TEHDTESM
P_ultimum ------------------------------------SRVTLSDVE
P_ultimum_1 ------------------------------------ERANRSETE
C_elegans ---------------------------KL-KVE-K-NPKDVKQTE
O_lucimarinus --------------------------------------VEKPESE
P_infestans ------------------------------------DVVKLSNEE
H_sapiensSelR1 ---------------------------------------------
H_sapiensSelR2 ----------------GPGTGPGLG--EA-GSL-ATCELPLAKSE
H_sapiensSelR3 ------------------------G--SC-RDK-KNCKVVFSQQE
S_cerevisiae ----------------------------------KKMSDESNDVK
S.parasitica1 ------------------------------------KPIPTTDDE
S_parasitica2 LFVVLVVLARASALRAFLAQHAELLLGELGPPLAF-AEVDLTPGE
S_parasitica3 -------------------------------------PFNLPDGE
T_trahens ---------------------------------------------
cons
C_merolae WKARLTPMQFEVARRAGTERPFTGEYWNE-KRTGIYRCVCCGTPL
C_owczarzaki ----------------------TGALYHN-TKPGVYSCVCCGQML
C_owczarzaki_1 ---------------------------------------------
E_siliculosus ---------------------------------------------
H_arabidopsis ---------------------------------------------
N_gruberi ---------------------------------------------
P_pallidum WKVKLSPEQFHVLRQKGTERAGTGQYNKHS-EEGVYNCAGCETPL
P_tricornutum WRGLLTREEFRVLRSHGTERPRSHRYDTWYPDTGCFACRACGLPL
P_ultimum WKAQLTPVQYQVLRLKGTERAGTGEYNKHY-QDGTYVCAGCKAPL
P_ultimum_1 WKAQLTPLQYQVLRLKGTEPAGSGEYDAHFAASGTYVCSGCHAPL
C_elegans WKSVLPNEVYRVARESGTETPHTGGFNDH-FEKGRYVCLCCGSEL
O_lucimarinus WKQELDAQAFQVLRQKGTEPARTGEYDKFYPSEGHFVCRGCGTPL
P_infestans WKQRLTPMQFQVLRLKGTERAGTGEYNKNK-ETGVYVCAGCKTPV
H_sapiensSelR1 -----------------CSFFGGEVFQNH-FEPGVYVCAKCGYEL
H_sapiensSelR2 WQKKLTPEQFYVTREKGTEPPFSGIYLNN-KEAGMYHCVCCDSPL
H_sapiensSelR3 LRKRLTPLQYHVTQEKGTESAFEGEYTHH-KDPGIYKCVVCGTPL
S_cerevisiae WNDALTPLQLMVLRDKATERPNTGAYLHTN-ESGVYHCANCDRPL
S.parasitica1 WKAKLTPWEYRVLRQKGTEPPGSGPLNKHF-EKGTYVCAGCHTPL
S_parasitica2 WQVKLSKEQFRILREKGTEAKGTGEYNKHY-ETGVYHCAGCDAPL
S_parasitica3 WRAKLSPEQYRVLRQKGTERPGTGAFTKHN-ALGTYLCAGCDAPL
T_trahens ---------------------------------------------
cons
C_merolae FSSETKFDSGTGWPSFYAPLSKEA-------VKERRDLSH-GMIR
C_owczarzaki FASSTKYDSGSGWPSFFDVLSKDA-------VNLSEDGAF-GMRR
C_owczarzaki_1 -RSQAKFDSGTGWPSFYDAVDKKN-------IKTERDDKF-GMVR
E_siliculosus --------------------------------------------Q
H_arabidopsis YTSTTKFDSGCGWPAFYDAI-PGA-------IKTIPDAD---GRR
N_gruberi -----EFYKGSGWPSFWAPFKPKA-------IGYVVDKKF-GMER
P_pallidum YTSKSKFNSGCGWPAFFEAI-PGA-------LTIFEDRSH-GMVR
P_tricornutum YAARAKFDSGSGWPSFGTHVQG--------AVATTVEQSPVMGKR
P_ultimum YTSETKFDSGCGWPAFYDAI-PGA-------IKAIPDPD---GRR
P_ultimum_1 YTADKKFDSGCGWPAFYDVL-PHA-------I-------------
C_elegans FNSDAKFWAGCGWPAFSESVGQDA------NIVRIVDRSH-GMHR
O_lucimarinus YSAKSKFDSGCGWPAFDKCY-AGA-------LKTEIDNAF-GMRR
P_infestans YTSTTKFDSGCGWPAFYDAI-PGA-------IKAVPDAD---GRR
H_sapiensSelR1 FSSRSKYAHSSPWPAFTETIHAD-------SVAKRPE-H-NRSEA
H_sapiensSelR2 FSSEKKYCSGTGWPSFSEAHGTSGSDESHTGILRRLDTSL-GSAR
H_sapiensSelR3 FKSETKFDSGSGWPSFHDVINSEA-------ITFTDDFSY-GMHR
S_cerevisiae YSSKAKFDARCGWPAFYEEVSPGA-------ITYHRDNSL-MPAR
S.parasitica1 YSSAHKFDSGCGWPAFYDAL-PSA-------ISWVPDSD---GQR
S_parasitica2 YKSETKFDSGCGWPAFFDAL-PDA-------IVSQPDV---DGRR
S_parasitica3 YTSSQKFNSGCGWPAFFDAI-PNA-------IKALPDG-----SR
T_trahens ------FDSGCGWPAFYDSV-EGA-------VARKSES-F-PDTR
cons
C_merolae TEVLCAVCDAHLGHVFP---DGP-------KPTGLRYCMNSYSLK
C_owczarzaki IEVECSSCGSHLGHVFD---DGP-------APTRLRYCINSVSLG
C_owczarzaki_1 VEAMCNHCDSHLGHIFD---DGP-------RPTGLRYCINSASIK
E_siliculosus REVRCSNCDGHLGHVFP---DGP-------KPTGLRYCMNGVAMG
H_arabidopsis IEIVCAKCDGHMGHVFKG--EGFN------TPTDERHCVNSASLV
N_gruberi VEVVCTNCHSHLGHVFE---DGPR------DKTKLRYCINAVCLA
P_pallidum TEICCKNCGGHLGHVFKKKGEGYS------TPTDERHCVNSIS--
P_tricornutum VEIHCARCQSHLGHVFA---DTNTAKWDRLKTFSERHCVNGISLM
P_ultimum TEIVCAKCDGHMGHVFKG--EGFK------TPTDERHCVNSVSLV
P_ultimum_1 --------KSHLGHVIRG--EGHK------MPTDKRHCINSVAIV
C_elegans TEVRCKTCDAHLGHVFN---DGPK------ETTGERYXINSVCMA
O_lucimarinus VEIMCAACDGHLGHVFEN--EGF-------SATMERHXVNSVSVK
P_infestans TEIMCAKCDGHMGHVFKG--EGFK------TPTDERHXVNSVSLV
H_sapiensSelR1 LKVSCGKCGNGLGHEFLN--DGP-------KPGQSRFXIFSSSLK
H_sapiensSelR2 TEVVCKQCEAHLGHVFP---DGP-------GPNGQRFXINSVALK
H_sapiensSelR3 VETSCSQCGAHLGHIFD---DGP-------RPTGKRYXINSAALS
S_cerevisiae VEICCARCGGHLGHVFEG--EGWK-QLL-NLPKDTRHXVNSASLN
S.parasitica1 TEIVCAVCHGHMGHVFEN--EGFP------TPTNHRHCVNSISIK
S_parasitica2 TEIICANCGGHMGHVFTG--EGFK------TPTDQRHCVNSVSVR
S_parasitica3 IEIVCANCGGHMGHVFKG--EGFE------TPTDERHCVNSVSLK
T_trahens TEILCSACGGHIGHVFAG--EGFK------TPTNERHCANSVSLK
cons :** : : *. . .
C_merolae FEP----------------------KE
C_owczarzaki --------------------------F
C_owczarzaki_1 LN-----------------------KQ
E_siliculosus FEP----------------------KE
H_arabidopsis FYGNE------------------VPPQ
N_gruberi L------------------------KK
P_pallidum --------------------------L
P_tricornutum YS-----------------------KN
P_ultimum FHAG--------------------EVP
P_ultimum_1 F-------------------------H
C_elegans FEK----------------------KD
O_lucimarinus YV-----------------------PA
P_infestans FHASE------------------VPPQ
H_sapiensSelR1 FVPKGK----------ET---SASQGH
H_sapiensSelR2 FKP---------------------RKH
H_sapiensSelR3 FTPADSSGTAEGGSGVASPAQADKAEL
S_cerevisiae LK-----------------------KD
S.parasitica1 F-------------------------K
S_parasitica2 --------------------------F
S_parasitica3 --------------------------F
T_trahens FK-----------------------PK
cons