Command line: [exonerate -m p2g --showtargetgff -q query_celegans.fa -t trahensgenomic.fa]
Hostname: [localhost.localdomain]

C4 Alignment:
------------
         Query: SPP00000059_1.0 # Protein # Selenoprotein R  (SelR) # Caenorhabditis elegans # Complete
        Target: gi|298517530|gb|GL349444.1|:subseq(166470,2210) Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.12, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 113
   Query range: 79 -> 151
  Target range: 292 -> 502

  80 : PheTrpAlaGlyCysGlyTrpProAlaPheSerGluSerValGlyGlnAspAlaAsnIleValA : 101
       |||   :!!|||||||||||||||||||||! !!!:||||||         ! !..!   ||| 
       PheAspSerGlyCysGlyTrpProAlaPheTyrAspSerVal---------GluGlyAlaValA
 293 : TTTGACTCGGGCTGTGGCTGGCCGGCGTTCTACGACTCGGTC---------GAGGGCGCGGTGG : 347

 102 : rgIleValAspArgSerHisGlyMetHisArgThrGluValArgCysLysThrCysAspAlaHi : 122
        !  !  !.....!|||  !  !     !|||||||||:!!! !|||..!.!!|||! !!.!||
       laArgLysSerGluSerPheProAspThrArgThrGluIleLeuCysSerAlaCysGlyGlyHi
 348 : CCCGCAAGTCGGAGAGCTTCCCGGACACCCGGACCGAGATCCTGTGCTCAGCATGCGGCGGACA : 410

 123 : sLeuGlyHisValPhe<->AsnAspGlyProLysGluThrThrGlyGluArgTyrUnkIleAsn : 142
       |:!!||||||||||||   ..!!!:|||  !|||  ! !!|||..!||||||:!!     !|||
       sIleGlyHisValPheAlaGlyGluGlyPheLysThrProThrAsnGluArgHisCysAlaAsn
 411 : CATCGGCCACGTCTTTGCCGGCGAGGGCTTTAAGACGCCAACCAACGAGCGGCATTGTGCAAAC : 473

 143 : SerValCysMetAlaPheGluLysLys : 151
       ||||||!  :!:  !|||:!!   |||
       SerValSerLeuLysPheLysProLys
 474 : TCGGTCTCGCTCAAGTTTAAGCCCAAG : 502

vulgar: SPP00000059_1.0 79 151 . gi|298517530|gb|GL349444.1|:subseq(166470,2210) 292 502 + 113 M 14 42 G 3 0 M 31 93 G 0 3 M 24 72
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-03-04
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|298517530|gb|GL349444.1|:subseq(166470,2210)	exonerate:protein2genome:local	gene	293	502	113	+	.	gene_id 1 ; sequence SPP00000059_1.0 ; gene_orientation .
gi|298517530|gb|GL349444.1|:subseq(166470,2210)	exonerate:protein2genome:local	cds	293	502	.	+	.	
gi|298517530|gb|GL349444.1|:subseq(166470,2210)	exonerate:protein2genome:local	exon	293	502	.	+	.	insertions 3 ; deletions 3
gi|298517530|gb|GL349444.1|:subseq(166470,2210)	exonerate:protein2genome:local	similarity	293	502	113	+	.	alignment_id 1 ; Query SPP00000059_1.0 ; Align 293 80 42 ; Align 335 97 93 ; Align 431 128 72
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis