TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000059_1.0 # Protein # Selenoprotein R (SelR) # Caenorhabditis elegans # Complete (152 letters) Database: T.trahens/genome.fa 131 sequences; 28,680,627 total letters Searching.................................................................done Score E Sequences producing significant alignments: (bits) Value gb|GL349444.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 59 3e-15 gb|GL349504.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 57 6e-09 gb|GL349437.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 30 0.60 gb|GL349447.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 30 0.78 gb|GL349485.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 29 1.0 gb|GL349450.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 29 1.0 gb|GL349435.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 29 1.3 gb|GL349434.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 29 1.3 gb|GL349507.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 28 2.3 gb|GL349497.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 28 2.3 gb|GL349465.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 28 3.0 gb|GL349441.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 28 3.0 gb|GL349499.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 27 3.9 gb|GL349486.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 27 3.9 gb|GL349476.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 27 5.1 gb|GL349492.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 27 6.6 gb|GL349464.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 27 6.6 gb|GL349452.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 27 6.6 gb|GL349466.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 26 8.7 gb|GL349463.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 26 8.7 >gb|GL349444.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.12, whole genome shotgun sequence Length = 562821 Score = 58.5 bits (140), Expect(2) = 3e-15 Identities = 32/73 (43%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Frame = +2 Query: 80 FWAGCGWPAFSESVGQDANIVRIVDRSHGMHRTEVRCKTCDAHLGHVF-NDGPKETTGER 138 F +GCGWPAF +SV V S RTE+ C C H+GHVF +G K T ER Sbjct: 166763 FDSGCGWPAFYDSV---EGAVARKSESFPDTRTEILCSACGGHIGHVFAGEGFKTPTNER 166933 Query: 139 YXINSVCMAFEKK 151 + NSV + F+ K Sbjct: 166934 HCANSVSLKFKPK 166972 Score = 39.3 bits (90), Expect(2) = 3e-15 Identities = 16/36 (44%), Positives = 23/36 (63%) Frame = +1 Query: 44 ESGTETPHTGGFNDHFEKGRYVCLCCGSELFNSDAK 79 E GTE TG +N HFE+G Y+C C + L+ ++ K Sbjct: 166570 EVGTERAGTGEYNKHFEEGTYLCAGCETPLYEAEHK 166677 >gb|GL349504.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.72, whole genome shotgun sequence Length = 111538 Score = 56.6 bits (135), Expect = 6e-09 Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 8/93 (8%) Frame = -1 Query: 62 GRYVCLCCGSELFNSDAKFWAGCGWPAFSESVGQDANIVRIVDRSHGMHRTEVRCKTCDA 121 G + C CCG+ +F++ K +G GWP+F+ V A R+ VRC C Sbjct: 15289 GVFACRCCGAPIFSAVDKCESGTGWPSFTRPVVAGAVCSPAGSRA-------VRCAACGM 15131 Query: 122 HLGHVFND--------GPKETTGERYXINSVCM 146 HLGHVF D P+ R+ I+ VC+ Sbjct: 15130 HLGHVFRDAGAFGECVNPESGEPSRFCIDGVCL 15032 >gb|GL349437.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.5, whole genome shotgun sequence Length = 654703 Score = 30.0 bits (66), Expect = 0.60 Identities = 18/56 (32%), Positives = 25/56 (44%) Frame = +3 Query: 7 RMEDVGLSKLKVEKNPKDVKQTEWKSVLPNEVYRVARESGTETPHTGGFNDHFEKG 62 R D + K KV KD + W++V PN +YRV R + G E+G Sbjct: 232407 RQRDQLVGKAKV----KDKGRARWRTVRPNRLYRVDRHRPRQQRGAGKMVRRLERG 232562 >gb|GL349447.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.15, whole genome shotgun sequence Length = 583276 Score = 29.6 bits (65), Expect = 0.78 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 10/61 (16%) Frame = +2 Query: 69 CGSELFNSDAKFWAGCGWPAFSESVGQDANIV---------RI-VDRSHGMHRTEVRCKT 118 CG + +DA G GW A + +G V RI VD G+HR+ VR ++ Sbjct: 253421 CGGQFVRTDAGVCTGHGWRASGDGLGLGRQSVVAGGPFCSRRISVDGILGVHRSGVRPQS 253600 Query: 119 C 119 C Sbjct: 253601 C 253603 >gb|GL349485.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.53, whole genome shotgun sequence Length = 297564 Score = 29.3 bits (64), Expect = 1.0 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%) Frame = -3 Query: 83 GCGWPAFSESVGQDAN----IVRIVDRSHGMHRTEVRCKTCDAHLGHV 126 G G + +SVG+DA +V IVDRS V CD HLG + Sbjct: 117835 GDGGCSADDSVGRDAESGAVVVIIVDRSWRRSPERVCGAPCDQHLGRI 117692 >gb|GL349450.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.18, whole genome shotgun sequence Length = 527020 Score = 29.3 bits (64), Expect = 1.0 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 17/70 (24%) Frame = -3 Query: 65 VCLCCGSELFNSDAKFWAGCG-------------WPAFSESVGQD----ANIVRIVDRSH 107 VC+CCGS A W G G WP ++S D ++I + H Sbjct: 165419 VCVCCGS----GSAGGWEGSGRLVTDHRPSTVDRWPVTNQSPATDHSSISHISFFIRWCH 165252 Query: 108 GMHRTEVRCK 117 G R ++ C+ Sbjct: 165251 GWTRVQIECR 165222 >gb|GL349435.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.3, whole genome shotgun sequence Length = 673526 Score = 28.9 bits (63), Expect = 1.3 Identities = 16/41 (39%), Positives = 22/41 (53%) Frame = -2 Query: 45 SGTETPHTGGFNDHFEKGRYVCLCCGSELFNSDAKFWAGCG 85 SGTE H GG++D G CLC +E+ + + W G G Sbjct: 390025 SGTEGNH-GGYSDAKAAGANACLCARAEV--NAGRVWEGGG 389912 Score = 26.6 bits (57), Expect = 6.6 Identities = 17/55 (30%), Positives = 24/55 (43%) Frame = +2 Query: 78 AKFWAGCGWPAFSESVGQDANIVRIVDRSHGMHRTEVRCKTCDAHLGHVFNDGPK 132 A+ W GC W + G D +++R R R E R + D L V N G + Sbjct: 380237 ARVWRGCKWRRYGILGGGDRSVLR---RERLAQRREQRVRLDDGELLLVPNLGQR 380392 >gb|GL349434.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.2, whole genome shotgun sequence Length = 680870 Score = 28.9 bits (63), Expect = 1.3 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = -3 Query: 65 VCLCCGSELFNSDAKFWAGCG 85 VC+CCG L AK AGCG Sbjct: 10488 VCVCCGWWLAGGGAKTQAGCG 10426 >gb|GL349507.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.75, whole genome shotgun sequence Length = 82001 Score = 28.1 bits (61), Expect = 2.3 Identities = 19/55 (34%), Positives = 24/55 (43%) Frame = +1 Query: 91 ESVGQDANIVRIVDRSHGMHRTEVRCKTCDAHLGHVFNDGPKETTGERYXINSVC 145 + VG A IVR RSH H+ +V AH G V +D ER + C Sbjct: 37678 DEVGVGAGIVRRPGRSHARHKVDV------AHWGRVRDD-------ERLVVGDAC 37803 >gb|GL349497.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.65, whole genome shotgun sequence Length = 192353 Score = 28.1 bits (61), Expect = 2.3 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Frame = +3 Query: 80 FWAGCGWPAFSESVGQDANIV--RIVDRSHGMHRTEVRCKTCDAH 122 FWA C A ++VG+D + + ++ RSHG + C +C H Sbjct: 87981 FWAWC*AVASKQAVGRDCDGIL*SVIKRSHGGNEA---CGSCARH 88106 >gb|GL349465.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.33, whole genome shotgun sequence Length = 407772 Score = 27.7 bits (60), Expect = 3.0 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 81 WAGCGWPAFSESVGQDANIVRIVDRSH 107 W GCG FS VGQ A VD++H Sbjct: 355213 WGGCGLAVFSGGVGQGA-----VDKTH 355278 >gb|GL349441.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.9, whole genome shotgun sequence Length = 584593 Score = 27.7 bits (60), Expect = 3.0 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 3/35 (8%) Frame = -1 Query: 93 VGQDANIVRIVDRSHGMHRTE---VRCKTCDAHLG 124 VGQ +++R+ +R HG R E + C H+G Sbjct: 245254 VGQGHSLLRVAERHHGEDRAEDLLAHARVCRRHVG 245150 Score = 26.9 bits (58), Expect = 5.1 Identities = 11/41 (26%), Positives = 17/41 (41%) Frame = +2 Query: 48 ETPHTGGFNDHFEKGRYVCLCCGSELFNSDAKFWAGCGWPA 88 +T T F K +C CG ++ A CG+P+ Sbjct: 120986 QTKGTSSFGKRHTKTHVLCRRCGQRAYHVQKATCASCGYPS 121108 >gb|GL349499.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.67, whole genome shotgun sequence Length = 163634 Score = 27.3 bits (59), Expect = 3.9 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 6/59 (10%) Frame = +1 Query: 64 YVCLCCGSEL-----FNSDAKFWA-GCGWPAFSESVGQDANIVRIVDRSHGMHRTEVRC 116 YVC+C GSE + WA GC + I+RIV RS+G+ C Sbjct: 102103 YVCVCMGSECGWRMWVAVFERVWACGCVFSELCMVRTDCVQIIRIVRRSYGLCADHTDC 102279 >gb|GL349486.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.54, whole genome shotgun sequence Length = 279941 Score = 27.3 bits (59), Expect = 3.9 Identities = 9/15 (60%), Positives = 10/15 (66%) Frame = +1 Query: 105 RSHGMHRTEVRCKTC 119 RSHG HR RC+ C Sbjct: 237613 RSHGSHRVRARCRRC 237657 >gb|GL349476.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.44, whole genome shotgun sequence Length = 310991 Score = 26.9 bits (58), Expect = 5.1 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 7/55 (12%) Frame = +1 Query: 61 KGRYVCLCCGSELFNSDAKFWAGCGWP-------AFSESVGQDANIVRIVDRSHG 108 +GR CLCCG+ LF ++ WP A + +GQ + +I + S G Sbjct: 236128 RGRGGCLCCGAPLFAIQPRW----EWPTTSRWVKAIRKRLGQAKALTKISESS*G 236280 >gb|GL349492.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.60, whole genome shotgun sequence Length = 221318 Score = 26.6 bits (57), Expect = 6.6 Identities = 9/31 (29%), Positives = 14/31 (45%) Frame = -3 Query: 105 RSHGMHRTEVRCKTCDAHLGHVFNDGPKETT 135 R G + C+ C + GH +GP+ T Sbjct: 152241 RQEGWRKRACACRDCSSRRGHYSGNGPQHVT 152149 >gb|GL349464.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.32, whole genome shotgun sequence Length = 401146 Score = 26.6 bits (57), Expect = 6.6 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -3 Query: 54 GFNDHFEKGRYVCLCCGSELFNSDAKFWAGCG 85 GF H+ + Y+CL G LF +A+ W G G Sbjct: 358013 GFARHW*E--YMCLSFGQRLFAGEAERWVGGG 357924 >gb|GL349452.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.20, whole genome shotgun sequence Length = 525314 Score = 26.6 bits (57), Expect = 6.6 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = -3 Query: 30 WKSVLPNEVYRVARESGTE 48 W +LPN VYR R G+E Sbjct: 376887 WVEILPNSVYRRVRGGGSE 376831 >gb|GL349466.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.34, whole genome shotgun sequence Length = 390530 Score = 26.2 bits (56), Expect = 8.7 Identities = 9/20 (45%), Positives = 11/20 (55%) Frame = +2 Query: 70 GSELFNSDAKFWAGCGWPAF 89 GSEL +D+ W WP F Sbjct: 360983 GSELLQADSSVWCDESWPTF 361042 >gb|GL349463.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.31, whole genome shotgun sequence Length = 395032 Score = 26.2 bits (56), Expect = 8.7 Identities = 11/30 (36%), Positives = 16/30 (53%) Frame = -1 Query: 7 RMEDVGLSKLKVEKNPKDVKQTEWKSVLPN 36 R++ V L+KLK PK T W+ P+ Sbjct: 249724 RLQPVNLAKLKERAQPKHTAVTGWRHAEPD 249635 Database: T.trahens/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 28,680,627 Number of sequences in database: 131 Lambda K H 0.318 0.134 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,984,165 Number of Sequences: 131 Number of extensions: 137363 Number of successful extensions: 908 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 18 Number of HSP's that attempted gapping in prelim test: 807 Number of HSP's gapped (non-prelim): 279 length of query: 152 length of database: 9,560,209 effective HSP length: 90 effective length of query: 62 effective length of database: 9,548,419 effective search space: 592001978 effective search space used: 592001978 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 56 (26.2 bits)