Command line: [exonerate -m p2g --showtargetgff -q query_celegans.fa -t parasitica3genomic.fa --exhaustive]
Hostname: [localhost.localdomain]

C4 Alignment:
------------
         Query:  query_Caenorhabditis elegans SPP00000059_1.0 # Protein # Selenoprotein R  (SelR) #  # Complete
        Target: gi|288565229|gb|GG743968.1|:subseq(119433,3000) Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.86, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 199
   Query range: 21 -> 148
  Target range: 999 -> 1365

   22 : ProLysAspValLysGlnThrGluTrpLysSerValLeuProAsnGluValTyrArgValAl :   42
        |||   :!!:!!   .!.  !||||||::!:!!  !|||  !  !|||  !|||||||||  
        ProPheAsnLeuProAspGlyGluTrpArgAlaLysLeuSerProGluGlnTyrArgValLe
 1000 : CCTTTCAACCTTCCCGACGGCGAATGGCGGGCCAAGCTCAGCCCCGAGCAGTACCGCGTTTT : 1060

   43 : aArgGluSerGlyThrGluThrProHisThrGlyGlyPheAsnAspHisPheGluLysGlyA :   63
        !|||:!!!.!|||||||||  !|||  !||||||!.!|||!.! ! |||  !! !   |||!
        uArgGlnLysGlyThrGluArgProGlyThrGlyAlaPheThrLysHisAsnAlaLeuGlyT
 1061 : GCGCCAGAAAGGCACCGAGCGGCCGGGCACAGGCGCCTTCACCAAGCACAACGCGCTTGGCA : 1123

   64 : rgTyrValCysLeuCysCysGlySerGluLeuPheAsnSerAspAlaLysPheTrpAlaGly :   83
         !|||:!!|||  ! !!|||! !:!!  !|||!:!!..|||...  !||||||   :!!|||
        hrTyrLeuCysAlaGlyCysAspAlaProLeuTyrThrSerSerGlnLysPheAsnSerGly
 1124 : CGTACCTCTGCGCGGGCTGCGACGCGCCGCTGTACACGTCATCGCAAAAGTTCAACTCGGGC : 1183

   84 : CysGlyTrpProAlaPheSerGluSerValGlyGlnAspAlaAsnIleValArgIleValAs :  104
        ||||||||||||||||||! !!!::!!:!!          !!|||   :!!!:!   :!!  
        CysGlyTrpProAlaPhePheAspAlaIle---------ProAsnAlaIleLysAlaLeuPr
 1184 : TGCGGATGGCCGGCCTTCTTTGATGCGATC---------CCGAATGCGATCAAAGCGCTGCC : 1237

  105 : pArgSerHisGlyMetHisArgThrGluValArgCysLysThrCysAspAlaHisLeuGlyH :  125
           !.!!           !|||! !|||:!!  !|||   !.!|||! !!.!|||:!!||||
        oAspGly---------SerArgIleGluIleValCysAlaAsnCysGlyGlyHisMetGlyH
 1238 : AGATGGC---------AGCCGCATCGAGATCGTCTGCGCCAACTGCGGCGGGCACATGGGGC : 1291

  126 : isValPhe<->AsnAspGlyProLysGluThrThrGlyGluArgTyrUnkIleAsnSerVal :  144
        ||||||||   ..!!!:|||  !:!!  ! !!|||! !||||||:!!   :!!|||||||||
        isValPheLysGlyGluGlyPheGluThrProThrAspGluArgHisCysValAsnSerVal
 1292 : ATGTTTTCAAGGGCGAGGGCTTCGAGACGCCGACCGACGAGCGCCATTGCGTCAACAGCGTC : 1351

  145 : CysMetAlaPhe :  148
        !  :!:  !|||
        SerLeuLysPhe
 1352 : TCGCTCAAGTTT : 1365

vulgar:  21 148 . gi|288565229|gb|GG743968.1|:subseq(119433,3000) 999 1365 + 199 M 72 216 G 3 0 M 10 30 G 3 0 M 18 54 G 0 3 M 21 63
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-03-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|288565229|gb|GG743968.1|:subseq(119433,3000)	exonerate:protein2genome:local	gene	1000	1365	199	+	.	gene_id 1 ; sequence  ; gene_orientation .
gi|288565229|gb|GG743968.1|:subseq(119433,3000)	exonerate:protein2genome:local	cds	1000	1365	.	+	.	
gi|288565229|gb|GG743968.1|:subseq(119433,3000)	exonerate:protein2genome:local	exon	1000	1365	.	+	.	insertions 3 ; deletions 6
gi|288565229|gb|GG743968.1|:subseq(119433,3000)	exonerate:protein2genome:local	similarity	1000	1365	199	+	.	alignment_id 1 ; Query  ; Align 1000 22 216 ; Align 1216 97 30 ; Align 1246 110 54 ; Align 1303 128 63
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis