Command line: [exonerate -m p2g --showtargetgff -q especialquerypultimum.fa -t ultimum1genomic.fa]
Hostname: [localhost.localdomain]

C4 Alignment:
------------
         Query: gi|301120252|ref|XP_002907853.1| methionine-R-sulfoxide reductase [Phytophthora infestans T30-4]
        Target: gi|299737303|gb|GL376586.1|:subseq(46300,2300) Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581794, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 271
   Query range: 0 -> 83
  Target range: 10 -> 262

   1 : MetSerSerSerAsnAspValValLysLeuSerAsnGluGluTrpLysGlnArgLeuThrProM :  22
       |||:!!:!!:!!::!!!:  !!.!!!.! !|||.!.   |||||||||  !!:!|||||||||:
       MetAlaAlaAlaSerGluArgAlaAsnArgSerGluThrGluTrpLysAlaGlnLeuThrProL
  11 : ATGGCTGCTGCGTCTGAGCGAGCGAACCGCTCCGAGACCGAGTGGAAGGCGCAACTGACGCCGC :  74

  23 : etGlnPheGlnValLeuArgLeuLysGlyThrGluArgAlaGlyThrGlyGluTyrAsnLysAs :  43
       !!|||!:!|||||||||||||||||||||||||||! !||||||:!!|||||||||:!!  !:!
       euGlnTyrGlnValLeuArgLeuLysGlyThrGluProAlaGlySerGlyGluTyrAspAlaHi
  75 : TGCAGTACCAGGTGCTGCGTCTCAAGGGCACCGAGCCGGCGGGCTCGGGCGAGTACGACGCACA : 137

  44 : n<->LysGluThrGlyValTyrValCysAlaGlyCysLysThrProValTyrThrSerThrThr :  63
       !      !  :!!|||..!|||||||||:!!|||||| ! .!!|||:!!||||||:!!  !! !
       sPheAlaAlaSerGlyThrTyrValCysSerGlyCysHisAlaProLeuTyrThrAlaAspLys
 138 : CTTTGCCGCTTCGGGTACGTACGTGTGCTCTGGATGCCATGCGCCGTTGTACACGGCAGACAAG : 200

  64 : LysPheAspSerGlyCysGlyTrpProAlaPheTyrAspAlaIleProGlyAlaIleLys :  83
       |||||||||||||||||||||||||||||||||||||||!.!:!!|||  !|||||||||
       LysPheAspSerGlyCysGlyTrpProAlaPheTyrAspValLeuProHisAlaIleLys
 201 : AAGTTCGACTCGGGCTGCGGCTGGCCGGCGTTTTATGACGTGCTTCCGCACGCCATCAAG : 262

vulgar: gi|301120252|ref|XP_002907853.1| 0 83 . gi|299737303|gb|GL376586.1|:subseq(46300,2300) 10 262 + 271 M 43 129 G 0 3 M 40 120
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-03-09
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|299737303|gb|GL376586.1|:subseq(46300,2300)	exonerate:protein2genome:local	gene	11	262	271	+	.	gene_id 1 ; sequence gi|301120252|ref|XP_002907853.1| ; gene_orientation .
gi|299737303|gb|GL376586.1|:subseq(46300,2300)	exonerate:protein2genome:local	cds	11	262	.	+	.	
gi|299737303|gb|GL376586.1|:subseq(46300,2300)	exonerate:protein2genome:local	exon	11	262	.	+	.	insertions 3 ; deletions 0
gi|299737303|gb|GL376586.1|:subseq(46300,2300)	exonerate:protein2genome:local	similarity	11	262	271	+	.	alignment_id 1 ; Query gi|301120252|ref|XP_002907853.1| ; Align 11 1 129 ; Align 143 44 120
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: gi|301120252|ref|XP_002907853.1| methionine-R-sulfoxide reductase [Phytophthora infestans T30-4]
        Target: gi|299737303|gb|GL376586.1|:subseq(46300,2300) Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581794, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 118
   Query range: 101 -> 131
  Target range: 486 -> 576

 102 : GlyHisMetGlyHisValPheLysGlyGluGlyPheLysThrProThrAspGluArgHisUnkV : 123
       .!!|||:!!|||||||||.!!:::|||||||||  !|||! !|||||||||:!!||||||   :
       SerHisLeuGlyHisValIleArgGlyGluGlyHisLysMetProThrAspLysArgHisCysI
 487 : AGCCACCTGGGTCATGTGATCCGTGGCGAGGGCCACAAGATGCCAACGGACAAACGCCACTGCA : 550

 124 : alAsnSerValSerLeuValPheHis : 131
       !!|||||||||:!!:!!|||||||||
       leAsnSerValAlaIleValPheHis
 551 : TCAACAGCGTGGCGATTGTTTTCCAC : 576

vulgar: gi|301120252|ref|XP_002907853.1| 101 131 . gi|299737303|gb|GL376586.1|:subseq(46300,2300) 486 576 + 118 M 30 90
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-03-09
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|299737303|gb|GL376586.1|:subseq(46300,2300)	exonerate:protein2genome:local	gene	487	576	118	+	.	gene_id 2 ; sequence gi|301120252|ref|XP_002907853.1| ; gene_orientation .
gi|299737303|gb|GL376586.1|:subseq(46300,2300)	exonerate:protein2genome:local	cds	487	576	.	+	.	
gi|299737303|gb|GL376586.1|:subseq(46300,2300)	exonerate:protein2genome:local	exon	487	576	.	+	.	insertions 0 ; deletions 0
gi|299737303|gb|GL376586.1|:subseq(46300,2300)	exonerate:protein2genome:local	similarity	487	576	118	+	.	alignment_id 2 ; Query gi|301120252|ref|XP_002907853.1| ; Align 487 102 90
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis