Command line: [exonerate -m p2g --showtargetgff -q query_sacaromices.fa -t tricornatum1genome.fa]
Hostname: [localhost.localdomain]

C4 Alignment:
------------
         Query: SPP00000077_1.0 # Protein # Selenoprotein R  (SelR) # Saccharomyces cerevisiae # Complete
        Target: gi|217409007|gb|CM000609.1|:subseq(329661,2500) Phaeodactylum tricornutum CCAP 1055/1 chromosome 6, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 202
   Query range: 34 -> 168
  Target range: 1407 -> 999

   35 : SerAspGluSerAsnAspValLysTrpAsnAspAlaLeuThrProLeuGlnLeuMetValLe :   55
        !!!!!:.!...!!..!!:  !! !|||..!! !  !||||||! !  !:!!!!!  !|||||
        ThrGluHisAspThrGluSerMetTrpArgGlyLeuLeuThrArgGluGluPheArgValLe
 1407 : ACCGAACACGACACGGAGTCTATGTGGCGCGGCCTATTGACACGGGAAGAATTCCGGGTCCT : 1347

   56 : uArgAspLysAlaThrGluArgProAsnThrGlyAlaTyr<->LeuHisThrAsnGluSerG :   75
        ||||... ! !.!||||||||||||..!:!!  !  !|||     !     !  !!!:!!!|
        uArgSerHisGlyThrGluArgProArgSerHisArgTyrAspThrTrpTyrProAspThrG
 1346 : GCGATCGCACGGTACGGAACGACCCCGCTCCCACCGGTACGATACGTGGTACCCCGACACCG : 1284

   76 : lyValTyrHisCysAlaAsnCysAspArgProLeuTyrSerSerLysAlaLysPheAspAla :   95
        ||  !!:!  !|||  !   |||!    !|||||||||:!!:!!::!||||||||||||:!!
        lyCysPheAlaCysArgAlaCysGlyLeuProLeuTyrAlaAlaArgAlaLysPheAspSer
 1283 : GCTGCTTCGCCTGCCGTGCGTGCGGGTTGCCACTCTACGCGGCCCGGGCCAAATTTGATTCC : 1224

   96 : ArgCysGlyTrpProAlaPheTyrGluGluValSerProGlyAlaIleThrTyrHisArgAs :  116
         !!!  |||||||||:!!|||     !.!.|||..!  !!.!!.!  !|||  !   ..!.!
        GlySerGlyTrpProSerPheGlyThrHisValGlnGlyAlaValAlaThrThrValGluGl
 1223 : GGCTCGGGATGGCCCTCGTTTGGAACGCATGTACAAGGTGCCGTTGCCACGACCGTGGAACA : 1161

  117 : pAsnSerLeuMetProAlaArgValGluIleCysCysAlaArgCysGlyGlyHisLeuGlyH :  137
        .::! !!:!!|||  !  !||||||||||||  !||||||||||||  !..!||||||||||
        nSerProValMetGlyLysArgValGluIleHisCysAlaArgCysGlnSerHisLeuGlyH
 1160 : GTCCCCGGTGATGGGGAAACGCGTCGAAATTCACTGCGCCCGCTGTCAGTCGCATTTGGGTC : 1098

  138 : isValPheGluGlyGluGlyTrpLysGlnLeuLeuAsnLeuProLys<->AspThrArgHis :  156
        ||||||||!  ! !   ..!  !   :!!! !  !...|||  !!     ...  !||||||
        isValPheAlaAspThrAsnThrAlaLysTrpAspArgLeuLysThrPheSerGluArgHis
 1097 : ACGTGTTTGCCGACACCAATACGGCCAAATGGGATCGACTCAAAACCTTCTCGGAGCGTCAC : 1038

  157 : UnkValAsnSerAlaSerLeuAsnLeuLysLysAsp :  168
           ||||||.!!  !||||||!  ! !!..|||:!!
        CysValAsnGlyIleSerLeuMetTyrSerLysAsn
 1037 : TGTGTGAACGGTATTAGTCTCATGTACAGTAAGAAC : 1000

vulgar: SPP00000077_1.0 34 168 . gi|217409007|gb|CM000609.1|:subseq(329661,2500) 1407 999 - 202 M 34 102 G 0 3 M 84 252 G 0 3 M 16 48
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-03-08
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|217409007|gb|CM000609.1|:subseq(329661,2500)	exonerate:protein2genome:local	gene	1000	1407	202	-	.	gene_id 1 ; sequence SPP00000077_1.0 ; gene_orientation .
gi|217409007|gb|CM000609.1|:subseq(329661,2500)	exonerate:protein2genome:local	cds	1000	1407	.	-	.	
gi|217409007|gb|CM000609.1|:subseq(329661,2500)	exonerate:protein2genome:local	exon	1000	1407	.	-	.	insertions 6 ; deletions 0
gi|217409007|gb|CM000609.1|:subseq(329661,2500)	exonerate:protein2genome:local	similarity	1000	1407	202	-	.	alignment_id 1 ; Query SPP00000077_1.0 ; Align 1408 35 102 ; Align 1303 69 252 ; Align 1048 153 48
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis