TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000077_1.0 # Protein # Selenoprotein R (SelR) # Saccharomyces cerevisiae # Complete (168 letters) Database: P.tricornutum/genome.fa 31 sequences; 23,733,684 total letters Searching...............................done Score E Sequences producing significant alignments: (bits) Value gb|CM000609.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 90 5e-19 gb|CM000614.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 73 6e-14 gb|CM000606.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 69 9e-13 gb|CM000629.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 28 2.3 gb|CM000619.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 28 2.3 gb|CM000628.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 27 6.8 gb|CM000616.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 27 6.8 gb|CM000615.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 26 8.9 >gb|CM000609.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 6, whole genome shotgun sequence Length = 1035082 Score = 90.1 bits (222), Expect = 5e-19 Identities = 55/154 (35%), Positives = 77/154 (50%), Gaps = 7/154 (4%) Frame = -2 Query: 22 IVLTQYWNKSKKM---SDESNDVKWNDALTPLQLMVLRDKATERPNTGAY-LHTNESGVY 77 +V Q+ N S+ + ++ + W LT + VLR TERP + Y ++G + Sbjct: 331116 LVPPQHHNGSQPIPHATEHDTESMWRGLLTREEFRVLRSHGTERPRSHRYDTWYPDTGCF 330937 Query: 78 HCANCDRPLYSSKAKFDARCGWPAFYEEVSPGAITYHRDNSLMPARVEICCARCGGHLGH 137 C C PLY+++AKFD+ GWP+F V T + +M RVEI CARC HLGH Sbjct: 330936 ACRACGLPLYAARAKFDSGSGWPSFGTHVQGAVATTVEQSPVMGKRVEIHCARCQSHLGH 330757 Query: 138 VFEGEG---WKQLLNLPKDTRHXVNSASLNLKKD 168 VF W +L + RH VN SL K+ Sbjct: 330756 VFADTNTAKWDRLKTFSE--RHCVNGISLMYSKN 330661 >gb|CM000614.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 12, whole genome shotgun sequence Length = 901853 Score = 73.2 bits (178), Expect = 6e-14 Identities = 40/105 (38%), Positives = 52/105 (49%) Frame = -1 Query: 35 SDESNDVKWNDALTPLQLMVLRDKATERPNTGAYLHTNESGVYHCANCDRPLYSSKAKFD 94 +DE WN PL+L VLR TE T + G + CA C L+ S AK+D Sbjct: 336617 TDEFRVQTWN----PLRLAVLRLGLTEPLATSPLNYGKYEGEFKCAYCGETLFDSNAKYD 336450 Query: 95 ARCGWPAFYEEVSPGAITYHRDNSLMPARVEICCARCGGHLGHVF 139 + GWP+F+ S A+ Y R+ M +E C RC HLGH F Sbjct: 336449 SGSGWPSFWRSASENAVQYKRE---MNGSLECQCKRCSSHLGHAF 336324 >gb|CM000606.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 2, whole genome shotgun sequence Length = 1497954 Score = 69.3 bits (168), Expect = 9e-13 Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 7/144 (4%) Frame = -2 Query: 4 WSRLYVITVRRTFPGRRNIVLTQ-YW------NKSKKMSDESNDVKWNDALTPLQLMVLR 56 W + V V T G + +T+ W ++S+ + + + +W L+ +Q VLR Sbjct: 328376 WKQTAVRAVSLTLLGAALVSITRPVWAAGDRKSRSEGYAVQKTENEWKTQLSSMQYYVLR 328197 Query: 57 DKATERPNTGAYLHTNESGVYHCANCDRPLYSSKAKFDARCGWPAFYEEVSPGAITYHRD 116 TE P GV+ C C PL+ S+ KF++ GWP+F + + Sbjct: 328196 QGGTEAPGFSVLQGEKRPGVFECVACGTPLFDSQFKFNSGTGWPSFARGMPGIEVEQLNP 328017 Query: 117 NSLMPARVEICCARCGGHLGHVFE 140 E+ C CGGHLG VF+ Sbjct: 328016 VQASLGGAELRCGTCGGHLGDVFQ 327945 Score = 30.8 bits (68), Expect = 0.36 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 6/70 (8%) Frame = -2 Query: 93 FDARCGW---PAFYEEVSPGAITYHRDNSLMPARVEICCAR---CGGHLGHVFEGEGWKQ 146 F+A GW PA Y G H + A +C +R G LG F+ +GW+ Sbjct: 1455614 FEAYSGWQKGPALYYSGGFG----HEEKRYSGASPRVCLSRRQDIFGRLG-AFQ*QGWEA 1455450 Query: 147 LLNLPKDTRH 156 +N P+ TR+ Sbjct: 1455449 RVNFPRRTRY 1455420 >gb|CM000629.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 27, whole genome shotgun sequence Length = 404298 Score = 28.1 bits (61), Expect = 2.3 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +2 Query: 83 DRPLYSSKAKFDARCGWPAFYEEVSPGAITYHRDNSLMPARV 124 D+P+YS A +D G+ ++ +EV+ T+ R PA + Sbjct: 283550 DKPIYSMPALYDLAFGYRSYEDEVTFLLQTHERCTGQTPANI 283675 >gb|CM000619.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 17, whole genome shotgun sequence Length = 703943 Score = 28.1 bits (61), Expect = 2.3 Identities = 10/28 (35%), Positives = 14/28 (50%) Frame = +3 Query: 112 TYHRDNSLMPARVEICCARCGGHLGHVF 139 T H + +P R E+CC C + H F Sbjct: 89874 TSHNERRAVPDRQELCCRGCKPRIRHTF 89957 >gb|CM000628.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 26, whole genome shotgun sequence Length = 441226 Score = 26.6 bits (57), Expect = 6.8 Identities = 20/54 (37%), Positives = 23/54 (42%) Frame = -2 Query: 84 RPLYSSKAKFDARCGWPAFYEEVSPGAITYHRDNSLMPARVEICCARCGGHLGH 137 R +SS+ FD CG PAF A+T SLM CAR H H Sbjct: 34284 RARHSSEQIFDKNCGVPAF------NALTSLAVISLMTIECSRSCAR--NHCSH 34147 >gb|CM000616.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 14, whole genome shotgun sequence Length = 829358 Score = 26.6 bits (57), Expect = 6.8 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = -2 Query: 93 FDARCGWPAFYEEVSPGAITYHRDNSLMPAR 123 FD R G+P E+ S RD+SL+PAR Sbjct: 351478 FDERVGFP*TVEDDSTSHSRCTRDHSLVPAR 351386 >gb|CM000615.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 13, whole genome shotgun sequence Length = 887524 Score = 26.2 bits (56), Expect = 8.9 Identities = 9/17 (52%), Positives = 11/17 (64%) Frame = +1 Query: 28 WNKSKKMSDESNDVKWN 44 W KK+ DES + KWN Sbjct: 834568 WISKKKILDESKEAKWN 834618 Database: P.tricornutum/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 23,733,684 Number of sequences in database: 31 Lambda K H 0.319 0.134 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,032,497 Number of Sequences: 31 Number of extensions: 97952 Number of successful extensions: 566 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 528 Number of HSP's gapped (non-prelim): 120 length of query: 168 length of database: 7,911,228 effective HSP length: 91 effective length of query: 77 effective length of database: 7,908,407 effective search space: 608947339 effective search space used: 608947339 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 56 (26.2 bits)