TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000077_1.0 # Protein # Selenoprotein R (SelR) # Saccharomyces cerevisiae # Complete (168 letters) Database: P.pallidum/genome.fa 42 sequences; 32,942,533 total letters Searching..........................................done Score E Sequences producing significant alignments: (bits) Value gb|GL291017.1| Polysphondylium pallidum PN500 unplaced genomic s... 122 9e-29 gb|GL291012.1| Polysphondylium pallidum PN500 unplaced genomic s... 28 3.2 gb|GL290985.1| Polysphondylium pallidum PN500 unplaced genomic s... 28 3.2 gb|GL291009.1| Polysphondylium pallidum PN500 unplaced genomic s... 28 4.1 gb|GL291005.1| Polysphondylium pallidum PN500 unplaced genomic s... 27 5.4 gb|GL290990.1| Polysphondylium pallidum PN500 unplaced genomic s... 27 5.4 gb|GL290984.1| Polysphondylium pallidum PN500 unplaced genomic s... 27 5.4 gb|GL290992.1| Polysphondylium pallidum PN500 unplaced genomic s... 27 9.2 gb|GL290986.1| Polysphondylium pallidum PN500 unplaced genomic s... 27 9.2 >gb|GL291017.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig20, whole genome shotgun sequence Length = 464707 Score = 122 bits (307), Expect = 9e-29 Identities = 67/156 (42%), Positives = 82/156 (52%), Gaps = 34/156 (21%) Frame = +1 Query: 42 KWNDALTPLQLMVLRDKATERPNTGAYLHTNESGVYHCANCDRPLYSSKAKFDARCGWPA 101 +W L+P Q VLR K TER TG Y +E GVY+CA C+ PLY+SK+KF++ CGWPA Sbjct: 388099 EWKVKLSPEQFHVLRQKGTERAGTGQYNKHSEEGVYNCAGCETPLYTSKSKFNSGCGWPA 388278 Query: 102 FYEEVSPGAITYHRDNSLMPARVEICCARCGGHLGHVFE--------------------- 140 F+E + PGA+T D S R EICC CGGHLGHVF+ Sbjct: 388279 FFEAI-PGALTIFEDRSHGMVRTEICCKNCGGHLGHVFKVS*SRDEREIKVDQPYIIMFK 388455 Query: 141 -------------GEGWKQLLNLPKDTRHXVNSASL 163 GEG+ + P D RH VNS SL Sbjct: 388456 PHSKH*L**KK**GEGY----STPTDERHCVNSISL 388551 >gb|GL291012.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig15, whole genome shotgun sequence Length = 727357 Score = 28.1 bits (61), Expect = 3.2 Identities = 14/31 (45%), Positives = 16/31 (51%) Frame = -1 Query: 78 HCANCDRPLYSSKAKFDARCGWPAFYEEVSP 108 H N +YSS+ FD GWP FYE P Sbjct: 457375 HSYNALVQVYSSELGFDP-AGWPIFYEPTVP 457286 >gb|GL290985.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold3, whole genome shotgun sequence Length = 2290287 Score = 28.1 bits (61), Expect = 3.2 Identities = 14/52 (26%), Positives = 27/52 (51%) Frame = +1 Query: 22 IVLTQYWNKSKKMSDESNDVKWNDALTPLQLMVLRDKATERPNTGAYLHTNE 73 IVL W K++ + + ++K + LTP+ L+++ T N Y H ++ Sbjct: 1488091 IVLLNDWVKAQNVPGLTTEIKRIEGLTPIILIIVEATKTNPKNVLLYGHMDK 1488246 >gb|GL291009.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig12, whole genome shotgun sequence Length = 1458135 Score = 27.7 bits (60), Expect = 4.1 Identities = 11/26 (42%), Positives = 19/26 (73%) Frame = -1 Query: 49 PLQLMVLRDKATERPNTGAYLHTNES 74 P+ L +LR+K ++PNT ++H N+S Sbjct: 1144350 PIFLRILREKV-KKPNTALFVHNNQS 1144276 >gb|GL291005.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig8, whole genome shotgun sequence Length = 1319729 Score = 27.3 bits (59), Expect = 5.4 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 4/61 (6%) Frame = +2 Query: 95 ARCGWPAFYEEVSPG----AITYHRDNSLMPARVEICCARCGGHLGHVFEGEGWKQLLNL 150 A+C PAFY E++ AI + R N + + IC F+ E + + Sbjct: 722618 AKCSQPAFYNEIAERTGGIAIDFDRFNLITEMFMAICYRETSARKFQAFQNEVFSNTNGI 722797 Query: 151 P 151 P Sbjct: 722798 P 722800 >gb|GL290990.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold8, whole genome shotgun sequence Length = 2270872 Score = 27.3 bits (59), Expect = 5.4 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%) Frame = +2 Query: 2 NKWSRLYVITVRRTFPGRRNIVLTQYWNKS--KKMSDESNDV 41 NKW+ + + PGR N + +WN + +K+S + D+ Sbjct: 247613 NKWAE-----ISKLLPGRTNCAIKNHWNSTMKRKISKKQYDI 247723 >gb|GL290984.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold2, whole genome shotgun sequence Length = 3242543 Score = 27.3 bits (59), Expect = 5.4 Identities = 11/25 (44%), Positives = 12/25 (48%) Frame = +3 Query: 113 YHRDNSLMPARVEICCARCGGHLGH 137 Y RD S P + CC C LGH Sbjct: 2943372 YDRDRSAWPLLCDRCCRLCNHTLGH 2943446 >gb|GL290992.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold10, whole genome shotgun sequence Length = 1641145 Score = 26.6 bits (57), Expect = 9.2 Identities = 10/30 (33%), Positives = 16/30 (53%) Frame = -2 Query: 78 HCANCDRPLYSSKAKFDARCGWPAFYEEVS 107 HC CD+ + A+FD C W +Y+ + Sbjct: 683127 HCRVCDKCV----ARFDHHCPWSMYYKSTT 683050 >gb|GL290986.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold4, whole genome shotgun sequence Length = 1229170 Score = 26.6 bits (57), Expect = 9.2 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = -1 Query: 68 YLHTNESGVYHCANCDRPLYS 88 ++HTN++ V HC +RP YS Sbjct: 911224 HIHTNQTCVKHCGF*ERPNYS 911162 Database: P.pallidum/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 32,942,533 Number of sequences in database: 42 Lambda K H 0.319 0.134 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,781,684 Number of Sequences: 42 Number of extensions: 90712 Number of successful extensions: 357 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 329 Number of HSP's gapped (non-prelim): 73 length of query: 168 length of database: 10,980,844 effective HSP length: 93 effective length of query: 75 effective length of database: 10,976,938 effective search space: 823270350 effective search space used: 823270350 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 57 (26.6 bits)