Command line: [exonerate -m p2g --showtargetgff -q query_celegans.fa -t gruberigenomic.fa]
Hostname: [localhost.localdomain]

C4 Alignment:
------------
         Query: SPP00000059_1.0 # Protein # Selenoprotein R  (SelR) # Caenorhabditis elegans # Complete
        Target: gi|284085353|gb|GG738902.1|:subseq(188125,2500) Naegleria gruberi genomic scaffold NAEGRscaffold_58, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 176
   Query range: 78 -> 150
  Target range: 787 -> 1000

   79 : LysPheTrpAlaGlyCysGlyTrpProAlaPheSerGluSerValGlyGlnAspAlaAsnIl :   99
        :!!|||!::  !|||! !|||||||||:!!|||!!!!   !! !!  !! ! ! |||   ||
        GluPheTyrLysGlySerGlyTrpProSerPheTrpAlaProPheLysProLysAla---Il
  788 : GAATTTTATAAAGGTTCTGGTTGGCCATCATTCTGGGCTCCTTTTAAGCCAAAAGCC---AT :  845

  100 : eValArgIleValAspArgSerHisGlyMetHisArgThrGluValArgCysLysThrCysA :  120
        |! !  !:!!||||||!:!!.!  !||||||.!.|||..!||||||  !|||! !!.!||| 
        eGlyTyrValValAspLysLysPheGlyMetGluArgValGluValValCysThrAsnCysH
  846 : TGGATATGTAGTCGATAAAAAGTTTGGAATGGAACGTGTTGAAGTTGTTTGTACAAATTGTC :  908

  121 : spAlaHisLeuGlyHisValPheAsnAspGlyProLysGluThrThrGlyGluArgTyrUnk :  140
        !!:!!||||||||||||||||||.!.|||||||||:::!!:! !|||  !  !||||||   
        isSerHisLeuGlyHisValPheGluAspGlyProArgAspLysThrLysLeuArgTyrCys
  909 : ACTCTCATTTGGGTCACGTATTTGAGGATGGACCTCGTGATAAAACCAAATTGAGATATTGC :  968

  141 : IleAsnSerValCysMetAlaPheGluLys :  150
        ||||||:!!||||||:!:|||!!.:!!|||
        IleAsnAlaValCysLeuAlaLeuLysLys
  969 : ATCAATGCTGTTTGCCTTGCTTTGAAGAAA : 1000

vulgar: SPP00000059_1.0 78 150 . gi|284085353|gb|GG738902.1|:subseq(188125,2500) 787 1000 + 176 M 19 57 G 1 0 M 52 156
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-03-04
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|284085353|gb|GG738902.1|:subseq(188125,2500)	exonerate:protein2genome:local	gene	788	1000	176	+	.	gene_id 1 ; sequence SPP00000059_1.0 ; gene_orientation .
gi|284085353|gb|GG738902.1|:subseq(188125,2500)	exonerate:protein2genome:local	cds	788	1000	.	+	.	
gi|284085353|gb|GG738902.1|:subseq(188125,2500)	exonerate:protein2genome:local	exon	788	1000	.	+	.	insertions 0 ; deletions 1
gi|284085353|gb|GG738902.1|:subseq(188125,2500)	exonerate:protein2genome:local	similarity	788	1000	176	+	.	alignment_id 1 ; Query SPP00000059_1.0 ; Align 788 79 57 ; Align 845 99 156
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis