TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000059_1.0 # Protein # Selenoprotein R  (SelR) #
Caenorhabditis elegans # Complete
         (152 letters)

Database: E.siliculosus/genome.fa 
           35 sequences; 195,934,119 total letters

Searching...................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|FN649760.1| Ectocarpus siliculosus strain Ec 32, whole genom...    57   3e-08
emb|FN649747.1| Ectocarpus siliculosus strain Ec 32, whole genom...    47   3e-05
emb|FN649726.1| Ectocarpus siliculosus strain Ec 32, whole genom...    35   0.10 
emb|FN649728.1| Ectocarpus siliculosus strain Ec 32, whole genom...    33   0.29 
emb|FN649727.1| Ectocarpus siliculosus strain Ec 32, whole genom...    31   1.9  
emb|FN649732.1| Ectocarpus siliculosus strain Ec 32, whole genom...    30   4.2  
emb|FN649736.1| Ectocarpus siliculosus strain Ec 32, whole genom...    30   4.2  
emb|FN649749.1| Ectocarpus siliculosus strain Ec 32, whole genom...    30   4.2  
emb|FN649748.1| Ectocarpus siliculosus strain Ec 32, whole genom...    29   7.2  
emb|FN649740.1| Ectocarpus siliculosus strain Ec 32, whole genom...    28   9.4  
emb|FN649741.1| Ectocarpus siliculosus strain Ec 32, whole genom...    28   9.4  
emb|FN649746.1| Ectocarpus siliculosus strain Ec 32, whole genom...    28   9.4  

>emb|FN649760.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, unassigned sequences LGUn
          Length = 58155991

 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 26/40 (65%), Positives = 28/40 (70%)
 Frame = -3

Query: 113     EVRCKTCDAHLGHVFNDGPKETTGERYXINSVCMAFEKKD 152
               EVRC  CD HLGHVF DGPK  TG RY +N V M FE K+
Sbjct: 8237453 EVRCSNCDGHLGHVFPDGPK-PTGLRYCMNGVAMGFEPKE 8237337



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = -1

Query: 39      YRVARESGTETPHTGGFNDHFEKGRYVCLCCGSELFNSDAKFWAGCGW 86
               +R+    GTE   T   N    +G +VC  CG EL++S  K+ +G GW
Sbjct: 8238985 HRLQN*GGTEPSFTSPLNKEKREGVFVCAGCGQELYDSSTKYNSGTGW 8238842



 Score = 37.0 bits (84), Expect = 0.027
 Identities = 15/23 (65%), Positives = 17/23 (73%)
 Frame = -1

Query: 109      MHRTEVRCKTCDAHLGHVFNDGP 131
                + RTEV C    AHLGHVF+DGP
Sbjct: 44855641 LRRTEVLCARSGAHLGHVFDDGP 44855573



 Score = 32.0 bits (71), Expect = 0.85
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +1

Query: 69       CGSELFNSDAKFWAGCGWPAFSESVGQDANIVRIVDRSHGMHRTEVRCKTC 119
                C + L+    KF  GCGWP F  ++ QDA      ++     R E+ C  C
Sbjct: 45977269 CRTPLYEDSHKFDCGCGWPGFWTNI-QDA---VYEEKDADGRRCEILCSGC 45977409



 Score = 31.6 bits (70), Expect = 1.1
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 67       LCCGSELFNSDAKFWAGCGWPAFSESVGQDANIVRIVDRSHG 108
                +CC S  FN D  FW G G  +F    G+ ++ VR+   S G
Sbjct: 24034483 VCCSSYPFNRDFFFWGGGGGMSFQ---GRSSSAVRVCVSSRG 24034599



 Score = 30.0 bits (66), Expect = 3.2
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = -1

Query: 43       RESGTETPHTGGFNDHFEKGRYVCLCCGSELFNSDAKFWAGCGWP 87
                R S  +T  T  F     K    C  CG   F+   K  + CG+P
Sbjct: 13005835 RTSCQQTKGTASFGKRHNKTHTACRRCGRTSFHKQKKVCSSCGYP 13005701



 Score = 28.9 bits (63), Expect = 7.2
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 29       EWKSVLPNEVYRVARESGTETPHTGGFNDHFEKGRYVCLCC 69
                EW   +P  +Y VAR+ G        +   F+  R+ C CC
Sbjct: 13819782 EW---VPV*IYLVARQGGATMTTDSSWERRFQNARHGCCCC 13819895



 Score = 28.9 bits (63), Expect = 7.2
 Identities = 23/98 (23%), Positives = 40/98 (40%)
 Frame = -3

Query: 4       KKFRMEDVGLSKLKVEKNPKDVKQTEWKSVLPNEVYRVARESGTETPHTGGFNDHFEKGR 63
               + F + ++ +   +  K  K  K++ WK V+P  V R  R    + P T    D      
Sbjct: 4957265 RSFAITEILMLYCRGPKRKKSRKRSLWKRVMPKMVVRPPRFGVDKFPRTDCVWDKILSLV 4957086

Query: 64      YVCLCCGSELFNSDAKFWAGCGWPAFSESVGQDANIVR 101
                VCL   +E+            WP+  +S+ Q ++  R
Sbjct: 4957085 LVCLVIYTEV---------NVEWPSDFDSMAQQSSANR 4956999


>emb|FN649747.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG22
          Length = 2337862

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 20/31 (64%), Positives = 22/31 (70%)
 Frame = +2

Query: 104     DRSHGMHRTEVRCKTCDAHLGHVFNDGPKET 134
               D S GM R EV+C  C AH GHVFNDGP+ T
Sbjct: 1296566 DLSAGMVRKEVKCARCHAHQGHVFNDGPRPT 1296658



 Score = 39.3 bits (90), Expect = 0.005
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = +1

Query: 40      RVARESGTETPHTGGFNDHFE-----KGRYVCLCCGSELFNSDAKFWAGCGWPAFSE 91
               R     GTE P +G F++        +G + C  C    ++S +KF +G GWP+F E
Sbjct: 1295887 RYVVSGGTEPPFSGRFSNGVRYSTKRRGTFNCAVCDLPAYSSSSKFNSGTGWPSFYE 1296057


>emb|FN649726.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
              assembly, chromosome LG01
          Length = 3745584

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 99     IVRIVDRSHGMHRTEVRCKTCDAHLGHVFNDGP 131
              +V   D ++GM R E+ C  C  HLGHV +  P
Sbjct: 332549 VVTNTDNAYGMQRVEIVCAKCGGHLGHVVSFFP 332647


>emb|FN649728.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
              assembly, chromosome LG03
          Length = 7313625

 Score = 33.5 bits (75), Expect = 0.29
 Identities = 16/27 (59%), Positives = 20/27 (74%)
 Frame = -3

Query: 126    VFNDGPKETTGERYXINSVCMAFEKKD 152
              VFNDGPK T G+RY +N+  MAF  K+
Sbjct: 571795 VFNDGPKPT-GKRYCMNAASMAFIPKE 571718



 Score = 29.3 bits (64), Expect = 5.5
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
 Frame = -3

Query: 67     LCCGSELFNSDAKFWAGCGWPAFS---ESVGQDANIVRIVDRSHGMHRTEVRCKTCDAH 122
              LCC  EL+     F  G GW A++    S+   A    +   +    R   +C TC  H
Sbjct: 873673 LCCDIELWAPTVLFIRGAGWEAWTPRPRSLPPQALCTFVGSHACSSARRRAKCFTCCTH 873497


>emb|FN649727.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG02
          Length = 9289656

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +1

Query: 105     RSHGMHRTEVRCKTCDAHLGHVFNDGPK---ETTGERYXINSVCMAFEKK 151
               R   +H    RCK   AHL HV  DGP+   E  G+   +  + + F ++
Sbjct: 7265287 RPFALHSGRQRCKDRVAHLWHVAADGPEVGVERVGQENGLQLLLLLFHRR 7265436



 Score = 28.9 bits (63), Expect = 7.2
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
 Frame = +3

Query: 35      PNEVYR--VARESGTETPHTGGFNDHFEKGRYVCLCCGSELFNSDAKFWAGCGW 86
               PN  Y     R +G  +  T   N+  +  R++ LC     F S  + W   GW
Sbjct: 1818270 PNSCYNS*AFRHTGIPSDPTSSENNPHDLRRFLVLCAPPSPFRSPRRAWRSPGW 1818431


>emb|FN649732.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG07
          Length = 2353607

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +2

Query: 71      SELFNSDAKFWAGCGWPAFSESVGQDANIVRIVDRSHGMHR--TEVRCKTCDAHL 123
               S+  N+ +K   GC WP  S     DA + + ++ +  +H+  + +R   C +HL
Sbjct: 1326014 SKQHNAPSKPGRGCNWPVISTKGWNDALLGKALEANQWLHQGLSSLRLYLCLSHL 1326178


>emb|FN649736.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
              assembly, chromosome LG11
          Length = 5521395

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
 Frame = +1

Query: 78     AKFWAGCGWPAFSESV------GQDANIVRIVDRSHGMHRTEVRCKTCDAHLG 124
              A  W   G     ES+      GQD  +  ++D S  +   EVR   C AH+G
Sbjct: 640357 ATTWTSSGTTDGFESIDLSGYSGQDITVTGVLDNSEWLSIKEVRTHVCCAHVG 640515


>emb|FN649749.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG24
          Length = 3847105

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 20/54 (37%), Positives = 22/54 (40%)
 Frame = +1

Query: 40      RVARESGTETPHTGGFNDHFEKGRYVCLCCGSELFNSDAKFWAGCGWPAFSESV 93
               RV  E G  +P  GG      +G  VCLC           FW G GW  F  SV
Sbjct: 2487562 RVDAEDGGRSPGDGGV----AQGGEVCLC---------TFFWGGGGWGRFLVSV 2487684



 Score = 28.5 bits (62), Expect = 9.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 97      ANIVRIVDRSHGMHRTEVRCKTCDAHLGHVFNDG 130
               A + R        H T +RC  CD H+ H  N+G
Sbjct: 1732830 ARVFRQFCSMESKHDTRLRCSWCDWHVPHAPNEG 1732729


>emb|FN649748.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG23
          Length = 3983565

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 81      WAGCGWPAFSESVGQDANIVRIVDRSHGMHR 111
               W+GC WP  SE      N V +   +H +HR
Sbjct: 2792176 WSGCAWPVLSEPRNLAPN-VGLCPEAHRLHR 2792087


>emb|FN649740.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
              assembly, chromosome LG15
          Length = 5788546

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = +2

Query: 81     WAGCG----WPAFSESVGQDANIVRIVDRSHGMHRTEVRCKTC 119
              W GC     WPA S   G+D  ++ IVD+ +   R   R + C
Sbjct: 488600 WRGCSISTAWPAMSSDAGRDQAVI-IVDKGNVSCRPRRR*RLC 488725


>emb|FN649741.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
              assembly, chromosome LG16
          Length = 8064047

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 79     KFWAGCGWPAFSESVGQDANIVRIVDRSHGMHRTEVRCKT 118
              +FW+   WP    S G  A   R    +HG HRT    +T
Sbjct: 588900 RFWSC*DWPQRHRSSGAGAAASRSGAEAHGRHRTVTHGRT 589019



 Score = 28.5 bits (62), Expect = 9.4
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = -3

Query: 33      VLPNEVYRVARESGTETPHTGGFNDHFEKGRYVCLCCGSELFNSDAKFWAGCG 85
               ++P   +R+AR +   T +   F+   E  +Y CL   + + +  A  W+ CG
Sbjct: 3274275 LIPEGTHRLARRTRCRTLYIRCFSVTVEHTQYFCLHACARVLHIAA*IWSKCG 3274117


>emb|FN649746.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG21
          Length = 3571976

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
 Frame = +2

Query: 66      CLCCGSELFNSDAKF--WAGCGW 86
               C C G E  +S  +F  W GCGW
Sbjct: 2914493 CACMGQEYSSSGMQFPAWFGCGW 2914561


  Database: E.siliculosus/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 195,934,119
  Number of sequences in database:  35
  
Lambda     K      H
   0.318    0.134    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,053,598
Number of Sequences: 35
Number of extensions: 854529
Number of successful extensions: 5633
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 4848
Number of HSP's gapped (non-prelim): 2569
length of query: 152
length of database: 65,311,373
effective HSP length: 103
effective length of query: 49
effective length of database: 65,307,768
effective search space: 3200080632
effective search space used: 3200080632
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)