TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000077_1.0 # Protein # Selenoprotein R  (SelR) #
Saccharomyces cerevisiae # Complete
         (168 letters)

Database: C.parvum/genome.fa 
           8 sequences; 9,102,324 total letters

Searching........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000436.1| Cryptosporidium parvum Iowa II chromosome 8, whol...    26   3.7  
gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whol...    25   8.3  
gb|CM000432.1| Cryptosporidium parvum Iowa II chromosome 4, whol...    25   8.3  

>gb|CM000436.1| Cryptosporidium parvum Iowa II chromosome 8, whole genome shotgun sequence
          Length = 1344712

 Score = 26.2 bits (56), Expect = 3.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 22      IVLTQYWNKSKKMSDESNDVKWNDALTP 49
               I+L  Y+NK    +DESN + WN  + P
Sbjct: 1253050 IILIDYFNKIMCNTDESN-IYWNSKIIP 1253130


>gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whole genome shotgun
            sequence
          Length = 1332857

 Score = 25.0 bits (53), Expect = 8.3
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 2    NKWSRLYVITVRRTFP-GRRNIVLTQYWNKSKKMS 35
            NKW+ + VIT RR FP  RR  + T     +K+ +
Sbjct: 5523 NKWTTIRVIT-RRYFPISRRRTITTSRHTSTKRFN 5624


>gb|CM000432.1| Cryptosporidium parvum Iowa II chromosome 4, whole genome shotgun
              sequence
          Length = 1104417

 Score = 25.0 bits (53), Expect = 8.3
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 12/95 (12%)
 Frame = -2

Query: 12     VRRTFPGRRNIVLTQYWNKSKKMSDESNDVKWNDALTPLQLMVLRDKATERPNTGAYLHT 71
              +R+ F  RR+++     N   K  DE  D+   DA    Q+++LRDK        A  + 
Sbjct: 842879 LRQEFIFRRSLM-----NTINKEQDERMDM---DAR---QMVILRDKINNDLKMEAVRNA 842733

Query: 72     NESGV------------YHCANCDRPLYSSKAKFD 94
               +S V            + C NCD  ++ S+ + +
Sbjct: 842732 GKSSVDSQEDCLNCNDIFKCPNCDLEIFPSENEIE 842628


  Database: C.parvum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,102,324
  Number of sequences in database:  8
  
Lambda     K      H
   0.319    0.134    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,711,091
Number of Sequences: 8
Number of extensions: 20823
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 76
Number of HSP's gapped (non-prelim): 28
length of query: 168
length of database: 3,034,108
effective HSP length: 84
effective length of query: 84
effective length of database: 3,033,436
effective search space: 254808624
effective search space used: 254808624
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)