Command line: [exonerate -m p2g --showtargetgff -q query_celegans.fa -t cown2genomic.fa]
Hostname: [localhost.localdomain]

C4 Alignment:
------------
         Query: SPP00000059_1.0 # Protein # Selenoprotein R  (SelR) # Caenorhabditis elegans # Complete
        Target: supercontig_1.11:subseq(753301,2300) of Capsaspora owczarzaki ATCC 30864
         Model: protein2genome:local
     Raw score: 157
   Query range: 74 -> 151
  Target range: 996 -> 1221

   75 : AsnSerAspAlaLysPheTrpAlaGlyCysGlyTrpProAlaPheSerGluSerValGlyGl :   95
        !..|||.!.|||||||||   :!!|||  !|||||||||::!|||! !!!::!!|||! !:!
        ArgSerGlnAlaLysPheAspSerGlyThrGlyTrpProSerPheTyrAspAlaValAspLy
  997 : AGAAGCCAGGCAAAGTTCGATTCTGGCACCGGATGGCCGAGCTTTTACGATGCCGTCGACAA : 1057

   96 : nAspAlaAsnIleValArgIleValAspArgSerHisGlyMetHisArgThrGluValArgC :  116
        !     !||||||  !! !     !|||  !!.!  !||||||   |||..!|||!.!! !|
        s---LysAsnIleLysThrGluArgAspAspLysPheGlyMetValArgValGluAlaMetC
 1058 : G---AAGAACATCAAGACCGAGCGGGACGACAAGTTTGGCATGGTGCGTGTCGAGGCCATGT : 1117

  117 : ysLysThrCysAspAlaHisLeuGlyHisValPheAsnAspGlyProLysGluThrThrGly :  136
        ||!!.  !||||||:!!||||||||||||:!!|||:!!|||||||||!:!    !!||||||
        ysAsnHisCysAspSerHisLeuGlyHisIlePheAspAspGlyProArg---ProThrGly
 1118 : GCAACCACTGCGATTCGCACCTCGGGCACATCTTTGACGATGGCCCCAGG---CCCACCGGC : 1174

  137 : GluArgTyrUnkIleAsnSerValCysMetAlaPheGluLysLys :  151
          !||||||   |||||||||!.!! !!!:  !.!..!.|||:!!
        LeuArgTyrCysIleAsnSerAlaSerIleLysLeuAsnLysGln
 1175 : TTGCGCTATTGCATCAACTCGGCTTCCATCAAGCTGAACAAGCAG : 1221

vulgar: SPP00000059_1.0 74 151 . supercontig_1.11:subseq(753301,2300) 996 1221 + 157 M 21 63 G 1 0 M 36 108 G 1 0 M 18 54
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-03-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
supercontig_1.11:subseq(753301,2300)	exonerate:protein2genome:local	gene	997	1221	157	+	.	gene_id 1 ; sequence SPP00000059_1.0 ; gene_orientation .
supercontig_1.11:subseq(753301,2300)	exonerate:protein2genome:local	cds	997	1221	.	+	.	
supercontig_1.11:subseq(753301,2300)	exonerate:protein2genome:local	exon	997	1221	.	+	.	insertions 0 ; deletions 2
supercontig_1.11:subseq(753301,2300)	exonerate:protein2genome:local	similarity	997	1221	157	+	.	alignment_id 1 ; Query SPP00000059_1.0 ; Align 997 75 63 ; Align 1060 97 108 ; Align 1168 134 54
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis