Command line: [exonerate -m p2g --showtargetgff -q query_celegans.fa -t cowcgenomic.fa]
Hostname: [localhost.localdomain]

C4 Alignment:
------------
         Query: SPP00000059_1.0 # Protein # Selenoprotein R  (SelR) # Caenorhabditis elegans # Complete
        Target: supercontig_1.2:subseq(794491,2300) of Capsaspora owczarzaki ATCC 30864:[revcomp]
         Model: protein2genome:local
     Raw score: 205
   Query range: 51 -> 148
  Target range: 384 -> 99

  52 : ThrGlyGlyPheAsnAspHisPheGluLysGlyArgTyrValCysLeuCysCysGlySerGluL :  73
       ||||||!.!.!! !! !!:!!  !:!!   |||  !|||  !|||:!!|||||||||..!  !|
       ThrGlyAlaLeuTyrHisAsnThrLysProGlyValTyrSerCysValCysCysGlyGlnMetL
 384 : ACAGGCGCGCTCTATCACAACACCAAGCCTGGTGTCTATTCCTGTGTTTGCTGCGGGCAGATGC : 321

  74 : euPheAsnSerAspAlaLysPheTrpAlaGlyCysGlyTrpProAlaPheSerGluSerValGl :  94
       |||||   |||..!.!!|||!:!   :!!|||! !|||||||||:!!|||! !!!:  !:!!.!
       euPheAlaSerSerThrLysTyrAspSerGlySerGlyTrpProSerPhePheAspValLeuSe
 320 : TCTTTGCGTCGAGCACAAAATACGATTCAGGCTCTGGCTGGCCGTCCTTCTTTGACGTGCTCAG : 258

  95 : yGlnAspAlaAsnIleValArgIleValAspArgSerHisGlyMetHisArgThrGluValArg : 115
       !:!!||||||   :!!  !! !! !! !||| !!:!!  !||||||!.!|||! !||||||..!
       rLysAspAla---ValAsnLeuSerGluAspGlyAlaPheGlyMetArgArgIleGluValGlu
 257 : CAAGGACGCC---GTCAATCTGAGCGAAGATGGCGCGTTTGGGATGCGTCGCATTGAGGTAGAG : 198

 116 : CysLysThrCysAspAlaHisLeuGlyHisValPheAsnAspGlyProLysGluThrThrGlyG : 137
       |||!..:!!|||! !:!!||||||||||||||||||:!!|||||||||     !|||! !    
       CysSerSerCysGlySerHisLeuGlyHisValPheAspAspGlyProAlaProThrArg---L
 197 : TGCAGCTCTTGCGGTTCCCATCTTGGCCACGTTTTTGATGATGGGCCTGCTCCGACAAGA---C : 135

 138 : luArgTyrUnkIleAsnSerValCysMetAlaPhe : 148
        !||||||   ||||||||||||!  :!:!.!|||
       euArgTyrCysIleAsnSerValSerLeuGlyPhe
 134 : TGCGCTACTGCATCAACAGCGTCTCGCTCGGATTC : 100

vulgar: SPP00000059_1.0 51 148 . supercontig_1.2:subseq(794491,2300) 384 99 - 205 M 46 138 G 1 0 M 37 111 G 1 0 M 12 36
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-03-04
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
supercontig_1.2:subseq(794491,2300)	exonerate:protein2genome:local	gene	100	384	205	-	.	gene_id 1 ; sequence SPP00000059_1.0 ; gene_orientation .
supercontig_1.2:subseq(794491,2300)	exonerate:protein2genome:local	cds	100	384	.	-	.	
supercontig_1.2:subseq(794491,2300)	exonerate:protein2genome:local	exon	100	384	.	-	.	insertions 0 ; deletions 2
supercontig_1.2:subseq(794491,2300)	exonerate:protein2genome:local	similarity	100	384	205	-	.	alignment_id 1 ; Query SPP00000059_1.0 ; Align 385 52 138 ; Align 247 99 111 ; Align 136 137 36
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis