TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000059_1.0 # Protein # Selenoprotein R (SelR) # Caenorhabditis elegans # Complete (152 letters) Database: C.owczarzaki/genome.fa 89 sequences; 28,043,798 total letters Searching........................................................................................done Score E Sequences producing significant alignments: (bits) Value supercontig_1.2 of Capsaspora owczarzaki ATCC 30864 89 1e-18 supercontig_1.11 of Capsaspora owczarzaki ATCC 30864 70 5e-13 supercontig_1.14 of Capsaspora owczarzaki ATCC 30864 37 0.005 supercontig_1.6 of Capsaspora owczarzaki ATCC 30864 29 1.3 supercontig_1.5 of Capsaspora owczarzaki ATCC 30864 28 2.2 supercontig_1.13 of Capsaspora owczarzaki ATCC 30864 28 2.9 supercontig_1.9 of Capsaspora owczarzaki ATCC 30864 27 3.8 supercontig_1.1 of Capsaspora owczarzaki ATCC 30864 27 3.8 supercontig_1.16 of Capsaspora owczarzaki ATCC 30864 26 8.5 supercontig_1.3 of Capsaspora owczarzaki ATCC 30864 26 8.5 >supercontig_1.2 of Capsaspora owczarzaki ATCC 30864 Length = 2668053 Score = 88.6 bits (218), Expect = 1e-18 Identities = 44/97 (45%), Positives = 59/97 (60%) Frame = -3 Query: 52 TGGFNDHFEKGRYVCLCCGSELFNSDAKFWAGCGWPAFSESVGQDANIVRIVDRSHGMHR 111 TG + + G Y C+CCG LF S K+ +G GWP+F + + +DA + D + GM R Sbjct: 794875 TGALYHNTKPGVYSCVCCGQMLFASSTKYDSGSGWPSFFDVLSKDA-VNLSEDGAFGMRR 794699 Query: 112 TEVRCKTCDAHLGHVFNDGPKETTGERYXINSVCMAF 148 EV C +C +HLGHVF+DGP T RY INSV + F Sbjct: 794698 IEVECSSCGSHLGHVFDDGPAPTR-LRYCINSVSLGF 794591 Score = 26.6 bits (57), Expect = 6.5 Identities = 14/44 (31%), Positives = 18/44 (40%) Frame = -1 Query: 81 WAGCGWPAFSESVGQDANIVRIVDRSHGMHRTEVRCKTCDAHLG 124 W G G A E + + +R+ R RCK CD H G Sbjct: 1376790 WIGNGRRAVVERLNDETKPLRV--------RAHKRCKVCDRHQG 1376683 >supercontig_1.11 of Capsaspora owczarzaki ATCC 30864 Length = 1292811 Score = 70.1 bits (170), Expect = 5e-13 Identities = 36/76 (47%), Positives = 47/76 (61%) Frame = +2 Query: 76 SDAKFWAGCGWPAFSESVGQDANIVRIVDRSHGMHRTEVRCKTCDAHLGHVFNDGPKETT 135 S AKF +G GWP+F ++V + NI D GM R E C CD+HLGH+F+DGP+ T Sbjct: 754301 SQAKFDSGTGWPSFYDAVDKK-NIKTERDDKFGMVRVEAMCNHCDSHLGHIFDDGPR-PT 754474 Query: 136 GERYXINSVCMAFEKK 151 G RY INS + K+ Sbjct: 754475 GLRYCINSASIKLNKQ 754522 >supercontig_1.14 of Capsaspora owczarzaki ATCC 30864 Length = 919646 Score = 37.0 bits (84), Expect = 0.005 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 2/77 (2%) Frame = +3 Query: 42 ARESGTETPHTGGFNDHFEKGRYVCLCCGSELFNSDAKFWAGCG--WPAFSESVGQDANI 99 AR+SG T G DH +G+ V + G+ + + A GCG W + G+ + Sbjct: 439191 ARQSGGTTDGLGNCRDHRSRGKAVDVVRGTIVPTATAAG*GGCGGSWLGWG*CRGRGGGL 439370 Query: 100 VRIVDRSHGMHRTEVRC 116 V I+ RSHG H RC Sbjct: 439371 VGILRRSHG-HTFGGRC 439418 Score = 26.9 bits (58), Expect = 5.0 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = -1 Query: 40 RVARESGTETPHTGGFNDHFEKGRYVCLCCGSELFN 75 R+ R++ +GG N HF +G + C S FN Sbjct: 98492 RIERQTNRRGRCSGGGNAHFARGSSSAVQCSSRRFN 98385 >supercontig_1.6 of Capsaspora owczarzaki ATCC 30864 Length = 1617845 Score = 28.9 bits (63), Expect = 1.3 Identities = 19/65 (29%), Positives = 29/65 (44%) Frame = -3 Query: 63 RYVCLCCGSELFNSDAKFWAGCGWPAFSESVGQDANIVRIVDRSHGMHRTEVRCKTCDAH 122 RYV CCG +D F C F +V + I+R R + + ++C+T A Sbjct: 1212048 RYVKRCCGESFLATDLSFIGFC----FFVTVARSFTILRAT*R*TKLSSSFLKCQTRSAM 1211881 Query: 123 LGHVF 127 L +F Sbjct: 1211880 LVCIF 1211866 Score = 28.9 bits (63), Expect = 1.3 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = +1 Query: 90 SESVGQDANIVRIVDRSHGMHRTEVRCKTCDAHLG 124 S+ VG+ ++ R+V+ SHG H E + CD G Sbjct: 1601758 SDGVGRRSS--RVVEHSHGTHSCETETRRCDRAAG 1601856 Score = 26.6 bits (57), Expect = 6.5 Identities = 13/34 (38%), Positives = 15/34 (44%) Frame = -2 Query: 68 CCGSELFNSDAKFWAGCGWPAFSESVGQDANIVR 101 C G E S + A GWP FS +VG R Sbjct: 587983 CTGFENRPSSSTALASSGWPTFSPTVGGSPRTTR 587882 Score = 26.2 bits (56), Expect = 8.5 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = +3 Query: 62 GRYVCLCCGSELFNSDAKFWAGCGW 86 GR VC CC S+L ++ + A GW Sbjct: 213201 GRRVCCCCCSDLPDAARRSRAAPGW 213275 >supercontig_1.5 of Capsaspora owczarzaki ATCC 30864 Length = 1755934 Score = 28.1 bits (61), Expect = 2.2 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 3/59 (5%) Frame = +3 Query: 66 CLCCGSELFNSDAKFWAGCGW---PAFSESVGQDANIVRIVDRSHGMHRTEVRCKTCDA 121 C+ SD +WA C W P+ SES A+ ++ + R++ TCDA Sbjct: 585855 CVATVHPTLASDTMYWASCVWLIMPSLSESTRLKASAKTKTSQAMRIQRSKT---TCDA 586022 >supercontig_1.13 of Capsaspora owczarzaki ATCC 30864 Length = 955311 Score = 27.7 bits (60), Expect = 2.9 Identities = 10/19 (52%), Positives = 15/19 (78%) Frame = +3 Query: 102 IVDRSHGMHRTEVRCKTCD 120 IVD HG +++VRC+TC+ Sbjct: 792126 IVDLFHGQLKSQVRCQTCN 792182 Score = 26.2 bits (56), Expect = 8.5 Identities = 8/15 (53%), Positives = 11/15 (73%) Frame = +3 Query: 106 SHGMHRTEVRCKTCD 120 SH H T++ CKTC+ Sbjct: 681570 SHQAHATDIHCKTCE 681614 >supercontig_1.9 of Capsaspora owczarzaki ATCC 30864 Length = 1380613 Score = 27.3 bits (59), Expect = 3.8 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Frame = +3 Query: 41 VARESGTETPHT--GGFNDHFEKGRYVCLCCGSELFNSDAKF 80 V+ E+G +P GF+D + G C CC SE + F Sbjct: 837840 VSSEAGAASPSGC*AGFSDSSDGGCSCCCCCWSEAVSVSVSF 837965 Score = 26.9 bits (58), Expect = 5.0 Identities = 11/27 (40%), Positives = 13/27 (48%) Frame = -1 Query: 64 YVCLCCGSELFNSDAKFWAGCGWPAFS 90 ++C CC L A AGCGW S Sbjct: 646684 WLCWCCSGGLTGFGACKGAGCGWTGCS 646604 >supercontig_1.1 of Capsaspora owczarzaki ATCC 30864 Length = 3794667 Score = 27.3 bits (59), Expect = 3.8 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = -3 Query: 79 KFWAGCGWPAFSESVGQDANIVRIVDRSHGMHRTE 113 KF + CG A G+ AN VR + R H HR++ Sbjct: 2412613 KFCSCCGHGAVGNRAGRSANQVRALQRGH--HRSD 2412515 >supercontig_1.16 of Capsaspora owczarzaki ATCC 30864 Length = 797998 Score = 26.2 bits (56), Expect = 8.5 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 2/70 (2%) Frame = -2 Query: 61 KGRYVCLCCGSELFNSDAKFWAGC-GWPAFSESVGQDANIVR-IVDRSHGMHRTEVRCKT 118 + R+VC+CC W C G+ ++ A IV+ +VD HG C Sbjct: 375774 RSRFVCVCCR----------WILCVGFGEWARESTPTARIVKNLVDVEHGALLLPHHCHE 375625 Query: 119 CDAHLGHVFN 128 LGH N Sbjct: 375624 QLVSLGHADN 375595 >supercontig_1.3 of Capsaspora owczarzaki ATCC 30864 Length = 2526540 Score = 26.2 bits (56), Expect = 8.5 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%) Frame = +2 Query: 66 CLCCGS-ELFNSDAKFWAGCGWPAFSESVG 94 C CCG+ +L A+ A WP S+ VG Sbjct: 2398166 CCCCGARDLMCGKARLSASPAWPG*SQRVG 2398255 Database: C.owczarzaki/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 28,043,798 Number of sequences in database: 89 Lambda K H 0.318 0.134 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,679,103 Number of Sequences: 89 Number of extensions: 121454 Number of successful extensions: 822 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 653 Number of HSP's gapped (non-prelim): 473 length of query: 152 length of database: 9,347,932 effective HSP length: 90 effective length of query: 62 effective length of database: 9,339,922 effective search space: 579075164 effective search space used: 579075164 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 55 (25.8 bits)