TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000059_1.0 # Protein # Selenoprotein R  (SelR) #
Caenorhabditis elegans # Complete
         (152 letters)

Database: C.muris/genome.fa 
           84 sequences; 9,245,251 total letters

Searching...................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DS989733.1| Cryptosporidium muris RN66 scf_1106632373425 geno...    29   0.37 
gb|DS989739.1| Cryptosporidium muris RN66 scf_1106632373455 geno...    27   1.4  

>gb|DS989733.1| Cryptosporidium muris RN66 scf_1106632373425 genomic scaffold, whole
              genome shotgun sequence
          Length = 528544

 Score = 29.3 bits (64), Expect = 0.37
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -2

Query: 52     TGGFNDHFEKGRYVCLCCGSELFNSDAKFWAGCGWPA 88
              TG    H  K  ++C  CG   +    K  A CG+P+
Sbjct: 423297 TGSRGKHHGKTHFLCCRCGKRSYMVQKKRCASCGYPS 423187


>gb|DS989739.1| Cryptosporidium muris RN66 scf_1106632373455 genomic scaffold, whole
              genome shotgun sequence
          Length = 235446

 Score = 27.3 bits (59), Expect = 1.4
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -1

Query: 3      TKKFRMEDVGLSKLKVEKNPKDVKQTE 29
              TKK ++E + +   ++EK  K++KQTE
Sbjct: 134319 TKKIKLEKISICTSELEKLYKNIKQTE 134239


  Database: C.muris/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,245,251
  Number of sequences in database:  84
  
Lambda     K      H
   0.318    0.134    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,332,015
Number of Sequences: 84
Number of extensions: 15263
Number of successful extensions: 52
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48
Number of HSP's gapped (non-prelim): 13
length of query: 152
length of database: 3,081,750
effective HSP length: 83
effective length of query: 69
effective length of database: 3,074,778
effective search space: 212159682
effective search space used: 212159682
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)