TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000059_1.0 # Protein # Selenoprotein R (SelR) # Caenorhabditis elegans # Complete (152 letters) Database: C.merolae/genome.fa 20 sequences; 16,546,747 total letters Searching....................done Score E Sequences producing significant alignments: (bits) Value dbj|AP006498.2| Cyanidioschyzon merolae DNA, chromosome 16, comp... 129 3e-31 dbj|AP006499.2| Cyanidioschyzon merolae DNA, chromosome 17, comp... 28 1.4 dbj|AP006487.2| Cyanidioschyzon merolae DNA, chromosome 5, compl... 27 2.4 dbj|AP006490.2| Cyanidioschyzon merolae DNA, chromosome 8, compl... 27 2.4 dbj|AP006492.2| Cyanidioschyzon merolae DNA, chromosome 10, comp... 27 2.4 dbj|AP006493.2| Cyanidioschyzon merolae DNA, chromosome 11, comp... 27 2.4 dbj|AP006489.2| Cyanidioschyzon merolae DNA, chromosome 7, compl... 27 3.1 dbj|AP006496.2| Cyanidioschyzon merolae DNA, chromosome 14, comp... 27 4.0 dbj|AP006486.2| Cyanidioschyzon merolae DNA, chromosome 4, compl... 26 5.2 dbj|AP006502.2| Cyanidioschyzon merolae DNA, chromosome 20, comp... 26 6.8 dbj|AP006500.2| Cyanidioschyzon merolae DNA, chromosome 18, comp... 25 8.9 >dbj|AP006498.2| Cyanidioschyzon merolae DNA, chromosome 16, complete genome, complete sequence Length = 908485 Score = 129 bits (325), Expect = 3e-31 Identities = 70/148 (47%), Positives = 93/148 (62%), Gaps = 7/148 (4%) Frame = -2 Query: 12 GLSKLKV-EKNPKDVK------QTEWKSVLPNEVYRVARESGTETPHTGGFNDHFEKGRY 64 G S+LK+ + NP DVK + +WK+ L + VAR +GTE P TG + + G Y Sbjct: 502950 GSSRLKMSQSNPADVKDWRALTEEDWKARLTPMQFEVARRAGTERPFTGEYWNEKRTGIY 502771 Query: 65 VCLCCGSELFNSDAKFWAGCGWPAFSESVGQDANIVRIVDRSHGMHRTEVRCKTCDAHLG 124 C+CCG+ LF+S+ KF +G GWP+F + ++A + D SHGM RTEV C CDAHLG Sbjct: 502770 RCVCCGTPLFSSETKFDSGTGWPSFYAPLSKEA-VKERRDLSHGMIRTEVLCAVCDAHLG 502594 Query: 125 HVFNDGPKETTGERYXINSVCMAFEKKD 152 HVF DGPK TG RY +NS + FE K+ Sbjct: 502593 HVFPDGPK-PTGLRYCMNSYSLKFEPKE 502513 >dbj|AP006499.2| Cyanidioschyzon merolae DNA, chromosome 17, complete genome, complete sequence Length = 1232258 Score = 28.1 bits (61), Expect = 1.4 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = -2 Query: 53 GGFNDHFEKGRYVCLCC 69 GG NDH E R+ LCC Sbjct: 1015126 GGHNDHLESVRFAYLCC 1015076 Score = 26.2 bits (56), Expect = 5.2 Identities = 18/71 (25%), Positives = 32/71 (45%) Frame = +3 Query: 36 NEVYRVARESGTETPHTGGFNDHFEKGRYVCLCCGSELFNSDAKFWAGCGWPAFSESVGQ 95 +E+ +VAR+S TPHT + + CC + +SD + SV + Sbjct: 492003 HELGQVARDSRKRTPHTARLS---SRACAQVPCCTASTVSSDKRMAPRAHGIVMRRSVAR 492173 Query: 96 DANIVRIVDRS 106 +++V +D S Sbjct: 492174 RSSLVSHLDAS 492206 Score = 25.8 bits (55), Expect = 6.8 Identities = 10/22 (45%), Positives = 13/22 (59%) Frame = +3 Query: 100 VRIVDRSHGMHRTEVRCKTCDA 121 +R +D GMHR RC+ C A Sbjct: 899316 IRRMDALLGMHRKRCRCELCSA 899381 >dbj|AP006487.2| Cyanidioschyzon merolae DNA, chromosome 5, complete genome, complete sequence Length = 528682 Score = 27.3 bits (59), Expect = 2.4 Identities = 12/46 (26%), Positives = 19/46 (41%) Frame = +1 Query: 43 RESGTETPHTGGFNDHFEKGRYVCLCCGSELFNSDAKFWAGCGWPA 88 + GT T T K +C+ CG ++ A CG+P+ Sbjct: 465103 QRQGTMTKGTSSKGRRHGKSHTLCIRCGRRSYHIQKSTCASCGYPS 465240 >dbj|AP006490.2| Cyanidioschyzon merolae DNA, chromosome 8, complete genome, complete sequence Length = 739753 Score = 27.3 bits (59), Expect = 2.4 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = -3 Query: 102 IVDRSHGMHRTEVRCKTCD 120 IVD HG +R+ V+C CD Sbjct: 197945 IVDLFHGQYRSRVQCPECD 197889 >dbj|AP006492.2| Cyanidioschyzon merolae DNA, chromosome 10, complete genome, complete sequence Length = 839707 Score = 27.3 bits (59), Expect = 2.4 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 4/79 (5%) Frame = -3 Query: 42 ARESGTETPHTGGFNDHFEKGRYVCLCCGSELFNSDAKFW--AGCGWPAFSESVGQ--DA 97 ARES T + G C CC + SD F GCG S+ + D Sbjct: 125954 ARESRTHSRMVQGIAPPRVANAICCCCCRHRGYGSDEAFCMSIGCGTVVGSQERDRSPDL 125775 Query: 98 NIVRIVDRSHGMHRTEVRC 116 +++R +D +R +++C Sbjct: 125774 DVIRFMD-----YRPDLQC 125733 >dbj|AP006493.2| Cyanidioschyzon merolae DNA, chromosome 11, complete genome, complete sequence Length = 852849 Score = 27.3 bits (59), Expect = 2.4 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 14/53 (26%) Frame = +3 Query: 114 VRCKTCDAHLGHVFND--------------GPKETTGERYXINSVCMAFEKKD 152 V C C+ ++G V D G E +G Y INS+CM E+K+ Sbjct: 251211 VSCSVCNQYMGIVT*DATQTRARQKYRSFIGRDEVSGS-YFINSICMTVERKN 251366 >dbj|AP006489.2| Cyanidioschyzon merolae DNA, chromosome 7, complete genome, complete sequence Length = 584452 Score = 26.9 bits (58), Expect = 3.1 Identities = 16/53 (30%), Positives = 24/53 (45%) Frame = -1 Query: 84 CGWPAFSESVGQDANIVRIVDRSHGMHRTEVRCKTCDAHLGHVFNDGPKETTG 136 CG+P S G+ ++V +V R H E R + C A P++ TG Sbjct: 366172 CGFPFPSRYFGRAEHLVVVVGRGHRARPFEARPQGCQA-------PAPRQGTG 366035 >dbj|AP006496.2| Cyanidioschyzon merolae DNA, chromosome 14, complete genome, complete sequence Length = 852727 Score = 26.6 bits (57), Expect = 4.0 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 2/37 (5%) Frame = +1 Query: 111 RTEVRCKTC--DAHLGHVFNDGPKETTGERYXINSVC 145 +T V KTC DA G VF G TT +R SVC Sbjct: 123022 KTIVALKTCLCDADPGPVFTAGLAHTTNQRLAGCSVC 123132 >dbj|AP006486.2| Cyanidioschyzon merolae DNA, chromosome 4, complete genome, complete sequence Length = 513455 Score = 26.2 bits (56), Expect = 5.2 Identities = 12/36 (33%), Positives = 17/36 (47%) Frame = +2 Query: 84 CGWPAFSESVGQDANIVRIVDRSHGMHRTEVRCKTC 119 CG P+ S + + R R+ G RT RC+ C Sbjct: 427748 CGAPSESRMICFNGA*ARAASRADGRARTSGRCRNC 427855 >dbj|AP006502.2| Cyanidioschyzon merolae DNA, chromosome 20, complete genome, complete sequence Length = 1621617 Score = 25.8 bits (55), Expect = 6.8 Identities = 8/20 (40%), Positives = 13/20 (65%) Frame = +2 Query: 102 IVDRSHGMHRTEVRCKTCDA 121 ++D HG+H C++CDA Sbjct: 1610861 VLDGVHGVHNLAAVCRSCDA 1610920 Score = 25.4 bits (54), Expect = 8.9 Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 9/51 (17%) Frame = +1 Query: 23 KDVKQTEWKSVLPNEVYRVA---RESGTETPHTGG------FNDHFEKGRY 64 K ++ K L Y A E G H G +NDHF KGR+ Sbjct: 713716 KSIRSNRTKRYLGRRQYGTALLGEEGGCAHDHAGALVLHPNWNDHFSKGRH 713868 >dbj|AP006500.2| Cyanidioschyzon merolae DNA, chromosome 18, complete genome, complete sequence Length = 1253087 Score = 25.4 bits (54), Expect = 8.9 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = -2 Query: 107 HGMHRTE-VRCKTCDAHLGHVFNDGPKETTGERY 139 HG +RT+ + D H+ N PKETT +R+ Sbjct: 789466 HGNNRTDKIVDNVHDRHIADTANQLPKETTRKRH 789365 Database: C.merolae/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 16,546,747 Number of sequences in database: 20 Lambda K H 0.318 0.134 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,746,638 Number of Sequences: 20 Number of extensions: 65771 Number of successful extensions: 414 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 357 Number of HSP's gapped (non-prelim): 178 length of query: 152 length of database: 5,515,582 effective HSP length: 87 effective length of query: 65 effective length of database: 5,513,842 effective search space: 358399730 effective search space used: 358399730 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 54 (25.4 bits)