TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000077_1.0 # Protein # Selenoprotein R  (SelR) #
Saccharomyces cerevisiae # Complete
         (168 letters)

Database: A.taiwanensis/genome.fa 
           5379 sequences; 6,149,411 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABJQ01003852.1| Ascogregarina taiwanensis CLRanP95-E06.b1.ab1...    46   2e-06
gb|ABJQ01002508.1| Ascogregarina taiwanensis Contig2814, whole g...    25   3.6  
gb|ABJQ01002740.1| Ascogregarina taiwanensis Contig3057, whole g...    25   4.6  
gb|ABJQ01002584.1| Ascogregarina taiwanensis Contig2892, whole g...    24   7.9  
gb|ABJQ01000759.1| Ascogregarina taiwanensis Contig892, whole ge...    24   7.9  

>gb|ABJQ01003852.1| Ascogregarina taiwanensis CLRanP95-E06.b1.ab1, whole genome shotgun
           sequence
          Length = 894

 Score = 46.2 bits (108), Expect = 2e-06
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 10/56 (17%)
 Frame = -1

Query: 73  ESGVYHCANCDRPLYSSKAKFDARCGWPAF---YEEVS-------PGAITYHRDNS 118
           + G + C  C  PLYS+ AKFD+ CGWPAF   Y+ ++       PGA+    D S
Sbjct: 519 QEGHFVCKGCGEPLYSAAAKFDSGCGWPAFDKCYKGMTKCDDVDDPGAVVTQPDTS 352


>gb|ABJQ01002508.1| Ascogregarina taiwanensis Contig2814, whole genome shotgun sequence
          Length = 2158

 Score = 25.4 bits (54), Expect = 3.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 118 SLMPARVEICCARCGGHLGH 137
           S+  A  + CC++C GH G+
Sbjct: 529 SIYRAHFDCCCSKCCGHCGN 470


>gb|ABJQ01002740.1| Ascogregarina taiwanensis Contig3057, whole genome shotgun sequence
          Length = 1553

 Score = 25.0 bits (53), Expect = 4.6
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -1

Query: 59   ATERPNTGAYLHTNESGVYHCANCDRPLYSSKAKFDARCGW 99
            AT RP      H +   +Y C +C +  + + +K ++RC +
Sbjct: 1397 ATSRP------HISRCSMYSCISCPKD*WGADSK*NSRCNF 1293


>gb|ABJQ01002584.1| Ascogregarina taiwanensis Contig2892, whole genome shotgun sequence
          Length = 1575

 Score = 24.3 bits (51), Expect = 7.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 135  LGHVFEGEGWKQLLNLPKDTRH 156
            L H+++  GW  L +LP    H
Sbjct: 1416 LSHIYQLRGWPNLHDLPPSKHH 1481


>gb|ABJQ01000759.1| Ascogregarina taiwanensis Contig892, whole genome shotgun sequence
          Length = 769

 Score = 24.3 bits (51), Expect = 7.9
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 6/30 (20%)
 Frame = +2

Query: 78  HCANCDRPLYS------SKAKFDARCGWPA 101
           HC +  RP  +      S    D+RC WPA
Sbjct: 674 HCGHSARPFSNIFTAAASSTGEDSRCSWPA 763


  Database: A.taiwanensis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 6,149,411
  Number of sequences in database:  5379
  
Lambda     K      H
   0.319    0.134    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,531,362
Number of Sequences: 5379
Number of extensions: 24565
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of query: 168
length of database: 2,049,803
effective HSP length: 80
effective length of query: 88
effective length of database: 1,619,483
effective search space: 142514504
effective search space used: 142514504
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)