T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:1 sec.
SCORE=89
*
 BAD AVG GOOD
*
MsrA-Aureococcu   :  89
MsrA-Emiliania_   :  88
MsrA-Thalassios   :  89
MsrA-Chlamydomo   :  89
MsrA-Cyanidiosc   :  90
MsrA-Hyaloperon   :  91
MsrA-Polysphond   :  91
MsrA-Phaeodacty   :  87
MsrA-Phaeodacty   :  87
MsrA-Phaeodacty   :  91
MsrA-Phaeodacty   :  87
MsrA-Phaeodacty   :  87
_MsrA-Pythium_u   :  91
__MsrA-Pythium_   :  90
__MsrA-Pythium_   :  91
MsrA-Saprolegni   :  88
MsrA-Saprolegni   :  93
MsrA-Thecamonas   :  88
cons              :  89

MsrA-Aureococcu   A-------PSRRVATFALGXFWTPQQKFDLRDGVIWSTVGYTSGT
MsrA-Emiliania_   --------------TLALGXFWHPEEELAALPGVSETVVGYCGGS
MsrA-Thalassios   A-------LSNEVAVLASGXFWHPQRDFKRLEGVVDVIVGYTGGQ
MsrA-Chlamydomo   MATNGNGASGAELATFALGXFWHPEASFANVPGVVKTRVGYTGGS
MsrA-Cyanidiosc   ------------VAVFGGGCFWGLERRFFQTPGVYSTAVGYAGGS
MsrA-Hyaloperon   ---------TTNVATFAAGCFWGVQLAFDRIPGVLETSVGYTQGT
MsrA-Polysphond   -----------EKATFAAGCFWSVELVFQRMVGVLSTRVGYTNGV
MsrA-Phaeodacty   ---------GNEVAIVACGXFWHPQLQWSTEPGVARCVVGYSGGN
MsrA-Phaeodacty   -----------QVATFALGCFWGGELAYMREPGVVGTGVGYTQGQ
MsrA-Phaeodacty   ------------LATFAGGCFWGLELAYQRVPGVEYTAVGYAQGP
MsrA-Phaeodacty   -----------EVATFALGCFWGAELAFLRVQGVVGTKVGYSQGI
MsrA-Phaeodacty   -------------ATFGMGCFWKPSEELLKVPGVTETIAGYTGKA
_MsrA-Pythium_u   ---------NQSVATFAAGCFWGVELAFQRVPGVVDTKVGYAQGH
__MsrA-Pythium_   ------------VATFAAGCFWGVQLAFQRLHGVIDTTVGYAQGT
__MsrA-Pythium_   ------------VAYFAAGCFWGVELAFQRVPGVLHTTVGYAQGH
MsrA-Saprolegni   ---------SDNIATFAAGCFWSVELNFQRIPGVLETHVGYTNGP
MsrA-Saprolegni   ------------VATFAAGCFWGVQLHFQRMQGVLGTSVGYTNGH
MsrA-Thecamonas   S-------PKTEIATFGMGXFWNPQPLFDATRGVVSTVVGYTGGT

cons                             .. * **  .       **    .**    


MsrA-Aureococcu   --TPAPNYDDL----GDHTEALRLEFDEDVVSYEALVEQFWDL--
MsrA-Emiliania_   --TADPTYKSI----GDHTEALRVTFDSRVVSAESMLERFFEM--
MsrA-Thalassios   --KKNPTYQNI----MDATEAFIVEFDPSVISYEEILNEWAAQ--
MsrA-Chlamydomo   --RPNPTYESVCAG-DGHTEAMRVWFDPAIISYEDLLKQFFRE--
MsrA-Cyanidiosc   --LPDPTYYEVCSGRTGHAEVVRVVYDPQKVDYLTLLDVFWSA--
MsrA-Hyaloperon   --VDNPTYTQVCSGKTKHAEAIKIVFDDRKLSYDALLSKFWSI--
MsrA-Polysphond   --KLNPTYKEVCTGTTGHAEAVELEFDPAQVSYGQLLDVFWKK--
MsrA-Phaeodacty   --EPDPTYQTI----KDHTEAVLIEYNPDMISYEKILKLWGEA--
MsrA-Phaeodacty   --IEQPTYEQVCSGTTGHTEAIVVTYDPALVTYERLGQLAMERLG
MsrA-Phaeodacty   --ETNPTYNQVCAGSTGHTEAVMVYYNPDECRYEDLLDTFFER--
MsrA-Phaeodacty   --TRDPTYEKVCSGGTQHREAVMVVYDANVVSYATLLGVAMERLA
MsrA-Phaeodacty   NAESPPNYESVCFS-YEWVEGVRVVYDETQLEYDALLDAFFEA--
_MsrA-Pythium_u   --IDHPTYKQVCSGKTGHAEAIKIVFDKNEVTYPQLLDVFWKV--
__MsrA-Pythium_   --VENPSYKQVRTGKTGHAEAIRIVYNVHEISYSQLLDKFWSI--
__MsrA-Pythium_   --QENATYKQVCSGKTGHAETIKIEFDASEVTYAQLLDKFWSI--
MsrA-Saprolegni   --KANPTYTEVCTGKTGHAEAVRIKFDPAVVSYDALLDKFWSI--
MsrA-Saprolegni   --VPHPTYDQVCAGTTGHAEAVRVQFDPSVVSYDELLDKFWSI--
MsrA-Thecamonas   --TKSPTYRSM----GDHTEAIQITFDPNVVSYDTLVDIFFDS--

cons                   ..*  :        * . : ::        :         


MsrA-Aureococcu   -----HAPNKG-------SRQYRSAIFYHDEAQRECAERVQAQLF
MsrA-Emiliania_   -----HDPMPRA----FTGTQYRSAIFYHNDAQAETAAAVAGRQA
MsrA-Thalassios   -----HAPFYP------SKCQYRSAIFYCSEEQQSAAQKKIEELG
MsrA-Chlamydomo   -----HDPTQK------SKCQYKSAVWYHSEAHGTALAAVMKELE
MsrA-Cyanidiosc   -----HDPTQLNRQGNDVGTQYRSVIIYADDEQKRLAEATRAAFD
MsrA-Hyaloperon   -----HDPTTLNRQ-NDQGTQYRSGIYYHTEEQRKAALASKGEHQ
MsrA-Polysphond   -----HDPTTLNRQGGDQGTQYRSGIYYHNDRQHTEAEESKKQEQ
MsrA-Phaeodacty   -----DYPYSP------QKRQYRSGVFYLTEEQAKSAKEFVGKLS
MsrA-Phaeodacty   EN-----RYLRNQVGNDKGTQYRHGIYYHTQEQKKIAEGIISSY-
MsrA-Phaeodacty   -----VDPTTVNGQGGDRGKQYRTGVYFHTPEQEQVAQARFAAEQ
MsrA-Phaeodacty   VTTSSYDTYRMFEQ-DEDSRQYKHGVYYHNPEQQRLAHEFSESS-
MsrA-Phaeodacty   -----QEPKLG-------SRQYSSVIFPHDDTQQRIAADWLERNC
_MsrA-Pythium_u   -----HDPTMLNRQKNDVGTQYRSGIYYHDEDQRKEALASKEEHQ
__MsrA-Pythium_   -----HDPTTLNRQKNDVGTQYRSGIYVHSDDQRKEALASFAQRQ
__MsrA-Pythium_   -----HDPTTLNRQKEDVGTQYRSGIYYVNDEQKTQAIASKEAQQ
MsrA-Saprolegni   -----HDPTTLNQQ-NDVGTQYRSGIYYHSDAQKSLALASKASAQ
MsrA-Saprolegni   -----HDPTTLNR--------------------------------
MsrA-Thecamonas   -----HACSRPV----GKKRQYISAIWYASEEQKAVAEAKKAAM-

cons                                                           


MsrA-Aureococcu   ---------------------------------------------
MsrA-Emiliania_   ---------------------------------------------
MsrA-Thalassios   ---------------------------------------------
MsrA-Chlamydomo   ---------------------------------------------
MsrA-Cyanidiosc   KTLR-----------------------------------------
MsrA-Hyaloperon   KT-------------------------------------------
MsrA-Polysphond   LK-------------------------------------------
MsrA-Phaeodacty   AK-------------------------------------------
MsrA-Phaeodacty   ---------------------------------------------
MsrA-Phaeodacty   PK-------------------------------------------
MsrA-Phaeodacty   ---------------------------------------------
MsrA-Phaeodacty   NRLR-----------------------------------------
_MsrA-Pythium_u   KT-------------------------------------------
__MsrA-Pythium_   KH-------------------------------------------
__MsrA-Pythium_   QK-------------------------------------------
MsrA-Saprolegni   PRFRRPIVTEVVAAETFYVAEDYHQRYLEKYRSGIFYHNEEQRLA
MsrA-Saprolegni   ---------------------------------------------
MsrA-Thecamonas   ---------------------------------------------

cons                                                           


MsrA-Aureococcu   ---------PSKRYVRDTAIEPA--AEFFPAEAYHQKYRE-----
MsrA-Emiliania_   ---------S--SQAKHTSIEPA--GPFYRAEEYHQRFLAKQT--
MsrA-Thalassios   ---------KDGQRSVYVDLEPV--SAFYRGEEYHQDFLD-----
MsrA-Chlamydomo   ---------GKYRVRLATTVDPA--GDWWDAEEYHQKYIEKSMMR
MsrA-Cyanidiosc   ---------ENGYGRIVTELLPAADNPFYFAEEYHQQYLA-----
MsrA-Hyaloperon   -----------LSKSIVTEIEAA--TRFWVAEDNHQKYLE-----
MsrA-Polysphond   -----------YKQPIVTEILPA--GVFYPAEEYHQQYLQ-----
MsrA-Phaeodacty   ---------HSGERKLYVDIEPV--TKFYRGEEYHQFFLE-----
MsrA-Phaeodacty   ------------GEDCQTECLPA--QKFHFAEDYHQQYLL-----
MsrA-Phaeodacty   -----------YNRPMASELKAA--APFWPAEKYHQQYLE-----
MsrA-Phaeodacty   ------------NNRFGIELLMA--STFYDAEEDHQKYLY-----
MsrA-Phaeodacty   ---------GDGVATSWTTVEPL--ANFYRAENYHQRYWQ-----
_MsrA-Pythium_u   -----------LRNPIVTEIEPA--QRFWEAETYHQKYLQ-----
__MsrA-Pythium_   -----------LLKPIVTEVEAAA-ESFWSAEEYHQQYLA-----
__MsrA-Pythium_   -----------TEKTIVTEIEEF--RVFWVAEEYHQQYLE-----
MsrA-Saprolegni   AEEAKAQKAEAIKAEVVTEIVPA--GIFYHAEDYHQKYLE-----
MsrA-Saprolegni   ---------------------------------------------
MsrA-Thecamonas   ------------GPQCTTEVAPA--GPWYDAEEYHQKYIQ-----

cons                                                           


MsrA-Aureococcu   ------K
MsrA-Emiliania_   -----GR
MsrA-Thalassios   ------K
MsrA-Chlamydomo   RGSAGWW
MsrA-Cyanidiosc   ------K
MsrA-Hyaloperon   ------K
MsrA-Polysphond   ------K
MsrA-Phaeodacty   ------K
MsrA-Phaeodacty   ------K
MsrA-Phaeodacty   ------K
MsrA-Phaeodacty   ------K
MsrA-Phaeodacty   ------K
_MsrA-Pythium_u   ------K
__MsrA-Pythium_   ------K
__MsrA-Pythium_   ------K
MsrA-Saprolegni   ------K
MsrA-Saprolegni   ------Q
MsrA-Thecamonas   ------K

cons